fix: add -y auto mode bypass for all ccw-coordinator referenced skills

Harmonize orchestrator files (ccw.md, ccw-coordinator.md) with cross-file
consistency fixes, and add missing -y/--yes non-interactive bypass gates
to 7 skills that declared auto mode support but had blocking AskUserQuestion
calls: team-planex, issue:discover, issue:plan, issue:queue, issue:execute,
workflow:debug-with-file, issue:from-brainstorm.

.claude/commands/issue/discover.md

@@ -252,6 +252,17 @@ await updateDiscoveryState(outputDir, {
 const hasHighPriority = issues.some(i => i.priority === 'critical' || i.priority === 'high');
 const hasMediumFindings = prioritizedFindings.some(f => f.priority === 'medium');
 
+// Auto mode: auto-select recommended action
+if (autoYes) {
+  if (hasHighPriority) {
+    await appendJsonl('.workflow/issues/issues.jsonl', issues);
+    console.log(`Exported ${issues.length} issues. Run /issue:plan to continue.`);
+  } else {
+    console.log('Discovery complete. No significant issues found.');
+  }
+  return;
+}
+
 await AskUserQuestion({
   questions: [{
     question: `Discovery complete: ${issues.length} issues generated, ${prioritizedFindings.length} total findings. What would you like to do next?`,

.claude/commands/issue/execute.md

@@ -152,6 +152,12 @@ if (!QUEUE_ID) {
     return;
   }
 
+  // Auto mode: auto-select if exactly one active queue
+  if (autoYes && activeQueues.length === 1) {
+    QUEUE_ID = activeQueues[0].id;
+    console.log(`Auto-selected queue: ${QUEUE_ID}`);
+  } else {
+
   // Display and prompt user
   console.log('\nAvailable Queues:');
   console.log('ID'.padEnd(22) + 'Status'.padEnd(12) + 'Progress'.padEnd(12) + 'Issues');
@@ -176,6 +182,7 @@ if (!QUEUE_ID) {
   });
 
   QUEUE_ID = answer['Queue'];
+  } // end else (multi-queue prompt)
 }
 
 console.log(`\n## Executing Queue: ${QUEUE_ID}\n`);
@@ -203,6 +210,13 @@ console.log(`
 - Parallel in batch 1: ${dag.parallel_batches[0]?.length || 0}
 `);
 
+// Auto mode: use recommended defaults (Codex + Execute + Worktree)
+if (autoYes) {
+  var executor = 'codex';
+  var isDryRun = false;
+  var useWorktree = true;
+} else {
+
 // Interactive selection via AskUserQuestion
 const answer = AskUserQuestion({
   questions: [
@@ -237,9 +251,10 @@ const answer = AskUserQuestion({
   ]
 });
 
-const executor = answer['Executor'].toLowerCase().split(' ')[0];  // codex|gemini|agent
-const isDryRun = answer['Mode'].includes('Dry-run');
-const useWorktree = answer['Worktree'].includes('Yes');
+var executor = answer['Executor'].toLowerCase().split(' ')[0];  // codex|gemini|agent
+var isDryRun = answer['Mode'].includes('Dry-run');
+var useWorktree = answer['Worktree'].includes('Yes');
+} // end else (interactive selection)
 
 // Dry run mode
 if (isDryRun) {
@@ -451,27 +466,33 @@ if (refreshedDag.ready_count > 0) {
 if (useWorktree && refreshedDag.ready_count === 0 && refreshedDag.completed_count === refreshedDag.total) {
   console.log('\n## All Solutions Completed - Worktree Cleanup');
 
-  const answer = AskUserQuestion({
-    questions: [{
-      question: `Queue complete. What to do with worktree branch "${worktreeBranch}"?`,
-      header: 'Merge',
-      multiSelect: false,
-      options: [
-        { label: 'Create PR (Recommended)', description: 'Push branch and create pull request' },
-        { label: 'Merge to main', description: 'Merge all commits and cleanup worktree' },
-        { label: 'Keep branch', description: 'Cleanup worktree, keep branch for manual handling' }
-      ]
-    }]
-  });
+  // Auto mode: Create PR (recommended)
+  if (autoYes) {
+    var mergeAction = 'Create PR';
+  } else {
+    const answer = AskUserQuestion({
+      questions: [{
+        question: `Queue complete. What to do with worktree branch "${worktreeBranch}"?`,
+        header: 'Merge',
+        multiSelect: false,
+        options: [
+          { label: 'Create PR (Recommended)', description: 'Push branch and create pull request' },
+          { label: 'Merge to main', description: 'Merge all commits and cleanup worktree' },
+          { label: 'Keep branch', description: 'Cleanup worktree, keep branch for manual handling' }
+        ]
+      }]
+    });
+    var mergeAction = answer['Merge'];
+  }
 
   const repoRoot = Bash('git rev-parse --show-toplevel').trim();
 
-  if (answer['Merge'].includes('Create PR')) {
+  if (mergeAction.includes('Create PR')) {
     Bash(`git -C "${worktreePath}" push -u origin "${worktreeBranch}"`);
     Bash(`gh pr create --title "Queue ${dag.queue_id}" --body "Issue queue execution - all solutions completed" --head "${worktreeBranch}"`);
     Bash(`git worktree remove "${worktreePath}"`);
     console.log(`PR created for branch: ${worktreeBranch}`);
-  } else if (answer['Merge'].includes('Merge to main')) {
+  } else if (mergeAction.includes('Merge to main')) {
     // Check main is clean
     const mainDirty = Bash('git status --porcelain').trim();
     if (mainDirty) {

.claude/commands/issue/from-brainstorm.md

@@ -154,8 +154,8 @@ Phase 6: Bind Solution
    ├─ Update issue status to 'planned'
    └─ Returns: SOL-{issue-id}-{uid}
 
-Phase 7: Next Steps
-   └─ Offer: Form queue | Convert another idea | View details | Done
+Phase 7: Next Steps (skip in auto mode)
+   └─ Auto mode: complete directly | Interactive: Form queue | Convert another | Done
 ```
 
 ## Context Enrichment Logic

.claude/commands/issue/plan.md

@@ -263,6 +263,14 @@ for (let i = 0; i < agentTasks.length; i += MAX_PARALLEL) {
 for (const pending of pendingSelections) {
   if (pending.solutions.length === 0) continue;
 
+  // Auto mode: auto-bind first (highest-ranked) solution
+  if (autoYes) {
+    const solId = pending.solutions[0].id;
+    Bash(`ccw issue bind ${pending.issue_id} ${solId}`);
+    console.log(`✓ ${pending.issue_id}: ${solId} bound (auto)`);
+    continue;
+  }
+
   const options = pending.solutions.slice(0, 4).map(sol => ({
     label: `${sol.id} (${sol.task_count} tasks)`,
     description: sol.description || sol.approach || 'No description'

.claude/commands/issue/queue.md

@@ -273,6 +273,17 @@ const allClarifications = results.flatMap((r, i) =>
 ```javascript
 if (allClarifications.length > 0) {
   for (const clarification of allClarifications) {
+    // Auto mode: use recommended resolution (first option)
+    if (autoYes) {
+      const autoAnswer = clarification.options[0]?.label || 'skip';
+      Task(
+        subagent_type="issue-queue-agent",
+        resume=clarification.agent_id,
+        prompt=`Conflict ${clarification.conflict_id} resolved: ${autoAnswer}`
+      );
+      continue;
+    }
+
     // Present to user via AskUserQuestion
     const answer = AskUserQuestion({
       questions: [{
@@ -345,6 +356,14 @@ ccw issue queue list --brief
 
 **AskUserQuestion:**
 ```javascript
+// Auto mode: merge into existing queue
+if (autoYes) {
+  Bash(`ccw issue queue merge ${newQueueId} --queue ${activeQueueId}`);
+  Bash(`ccw issue queue delete ${newQueueId}`);
+  console.log(`Auto-merged new queue into ${activeQueueId}`);
+  return;
+}
+
 AskUserQuestion({
   questions: [{
     question: "Active queue exists. How would you like to proceed?",