refactor: remove subagent references and update CLI tool usage across documentation

docs/guide/ch01-what-is-claude-dms3.md

@@ -37,13 +37,13 @@
 
 | Concept | Description | Location/Command |
 |---------|-------------|------------------|
-| **CodexLens** | Semantic code indexing and search engine | `ccw search` |
+| **CodexLens** | Semantic code indexing and search engine | `mcp__ace-tool__search_context(project_root_path="...", query="...")` |
 | **CCW** | Unified CLI tool invocation framework | `ccw cli` |
-| **Memory** | Cross-session knowledge persistence | `ccw memory` |
+| **Memory** | Cross-session knowledge persistence | `mcp__ccw-tools__core_memory(operation="list")` |
 | **Spec** | Project specification and constraint system | `.workflow/specs/` |
 | **Hook** | Auto-triggered context injection scripts | `.claude/hooks/` |
 | **Agent** | Specialized AI subprocess for specific roles | `.claude/agents/` |
-| **Skill** | Reusable AI capability modules | `.claude/skills/` |
+| **Skill** | Reusable AI capability modules | `Skill(skill="<name>")` |
 | **Workflow** | Multi-phase development orchestration | `/workflow:*` |
 
 ---

docs/guide/ch02-getting-started.md

@@ -164,16 +164,16 @@ Multi-perspective brainstorming for diverse viewpoints:
 
 ### 2.5.1 View Project Memory
 
-```bash
-ccw memory list
+```typescript
+mcp__ccw-tools__core_memory(operation="list")
 ```
 
 Display all project memories, including learnings, decisions, conventions, and issues.
 
 ### 2.5.2 Search Related Memory
 
-```bash
-ccw memory search "authentication"
+```typescript
+mcp__ccw-tools__core_memory(operation="search", query="authentication")
 ```
 
 Semantic search for memories related to "authentication".
@@ -192,20 +192,16 @@ Interactively capture important knowledge points from the current session.
 
 ### 2.6.1 Semantic Search
 
-Use CodexLens search in VS Code:
+Use ACE semantic search via MCP tool:
 
-```bash
-# Search via CodexLens MCP endpoint
-ccw search "user login logic"
+```typescript
+mcp__ace-tool__search_context(
+  project_root_path="/path/to/project",
+  query="user login logic"
+)
 ```
 
-### 2.6.2 Call Chain Tracing
-
-Search function definitions and all call locations:
-
-```bash
-ccw search --trace "authenticateUser"
-```
+> **Note**: The CLI commands `ccw search` and `ccw memory` are deprecated. Use MCP tools directly.
 
 ---
 
@@ -297,7 +293,7 @@ npm install
 | `/workflow-plan` | Planning workflow |
 | `/brainstorm` | Brainstorming |
 | `/review-code` | Code review |
-| `ccw memory list` | View Memory |
+| `mcp__ccw-tools__core_memory(operation="list")` | View Memory |
 | `ccw cli -p "..."` | CLI invocation |
 
 ---

docs/guide/ch03-core-concepts.md

@@ -185,7 +185,7 @@ graph LR
 | **Prompt** | Codex prompt templates | `.codex/prompts/` |
 | **Workflow** | Team collaboration process | `/workflow:*` |
 | **Session** | Session context management | `/workflow:session:*` |
-| **Memory** | Cross-session knowledge persistence | `ccw memory` |
+| **Memory** | Cross-session knowledge persistence | `mcp__ccw-tools__core_memory(operation="list")` |
 | **Spec** | Project specification constraints | `.workflow/specs/` |
 | **CodexLens** | Semantic code indexing | `.codex-lens/` |
 | **CCW** | CLI invocation framework | `ccw` directory |

docs/guide/ch05-advanced-tips.md

@@ -192,7 +192,7 @@ Configure in `.claude/hooks.json`:
     {
       "name": "save-decisions",
       "description": "Save important decisions",
-      "command": "ccw memory import \"{content}\""
+      "command": "mcp__ccw-tools__core_memory(operation=\"import\", text=\"{content}\")"
     }
   ]
 }

docs/guide/ch06-best-practices.md

@@ -301,12 +301,14 @@ graph LR
 
 ### Memory Maintenance
 
-| Operation | Command |
+| Operation | MCP Tool |
 | --- | --- |
-| List memories | `ccw memory list` |
-| Search memories | `ccw memory search "..."` |
-| Import memory | `ccw memory import "..."` |
-| Export memory | `ccw memory export <id>` |
+| List memories | `mcp__ccw-tools__core_memory(operation="list")` |
+| Search memories | `mcp__ccw-tools__core_memory(operation="search", query="...")` |
+| Import memory | `mcp__ccw-tools__core_memory(operation="import", text="...")` |
+| Export memory | `mcp__ccw-tools__core_memory(operation="export", id="...")` |
+
+> **Note**: The CLI commands `ccw memory *` are deprecated. Use MCP tools directly.
 
 ---
 

docs/guide/workflows.md

@@ -50,8 +50,8 @@ The workflow executes automatically:
 
 After a checkpoint, resume the workflow:
 
-```bash
-ccw workflow resume
+```javascript
+Skill(skill="workflow-execute", args="--resume")
 ```
 
 ## Workflow Tasks
@@ -163,21 +163,21 @@ Always review checkpoints:
 
 Provide feedback during workflow:
 
-```bash
-# Add feedback during review
-ccw workflow feedback --task REVIEW-001 --message "Tests need more edge cases"
+```javascript
+// Add feedback during review
+Skill(skill="workflow-execute", args="--feedback --task REVIEW-001")
 ```
 
 ### 4. Monitor Progress
 
 Track workflow status:
 
-```bash
-# Check workflow status
-ccw workflow status
+```javascript
+// Check workflow status
+Skill(skill="workflow-execute", args="--status")
 
-# View task details
-ccw workflow task IMPL-001
+// View task details
+Skill(skill="workflow-execute", args="--task IMPL-001")
 ```
 
 ## Troubleshooting
@@ -186,21 +186,21 @@ ccw workflow task IMPL-001
 
 If a workflow stalls:
 
-```bash
-# Check for blocked tasks
-ccw workflow status --blocked
+```javascript
+// Check for blocked tasks
+Skill(skill="workflow-execute", args="--status --blocked")
 
-# Reset stuck tasks
-ccw workflow reset --task IMPL-001
+// Reset stuck tasks
+Skill(skill="workflow-execute", args="--reset --task IMPL-001")
 ```
 
 ### Failed Tasks
 
 Retry failed tasks:
 
-```bash
-# Retry with new prompt
-ccw workflow retry --task IMPL-001 --prompt "Fix the TypeScript errors"
+```javascript
+// Retry with new prompt
+Skill(skill="workflow-execute", args="--retry --task IMPL-001")
 ```
 
 ::: info See Also