config: Extend execution timeout and default --all-files for CLI workflows

- Add 5-minute timeout for Bash commands in both gemini and codex workflows
- Mark --all-files as default behavior for gemini with fallback on content limits
- Update all examples to show explicit --all-files usage in gemini-unified.md
- Add execution settings section for both workflow guides

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

.claude/workflows/codex-unified.md

@@ -86,6 +86,11 @@ type: technical-guideline
     -   Enclose paths with spaces in quotes: `@{"My Project/src/**/*"}`.
     -   Escape special characters like brackets: `@{src/**/*\[bracket\]*}`.
 
+### ⏱️ Execution Settings
+
+-   **Default Timeout**: Bash command execution extended to **5 minutes** to handle complex autonomous development workflows.
+-   **Autonomous Intelligence**: Codex automatically manages file discovery and context gathering in `--full-auto` mode.
+
 ### 📁 Shared Template Directory Structure
 
 > **📋 Complete Template Reference**: See [Shared Template System](./shared-template-system.md) for comprehensive template directory structure, cross-tool compatibility, and detailed usage patterns.

.claude/workflows/gemini-unified.md

@@ -24,21 +24,21 @@ type: technical-guideline
     gemini [flags] -p "@{patterns} {template} prompt"
     ```
 -   **Key Arguments**:
-    -   `--all-files`: Includes all files in the current working directory.
+    -   `--all-files`: Includes all files in the current working directory. **Default behavior unless content limit exceeded**.
     -   `-p`: The prompt string, which must contain file reference patterns and the analysis query.
     -   `{template}`: Template injection using `$(cat ~/.claude/workflows/cli-templates/prompts/[category]/[template].txt)` for standardized analysis
     -   `@{pattern}`: A special syntax for referencing files and directories.
 
 -   **Template Usage**:
     ```bash
-    # Without template (manual prompt)
-    gemini -p "@{src/**/*} @{CLAUDE.md} Analyze code patterns and conventions"
+    # Without template (manual prompt) - --all-files is default
+    gemini --all-files -p "@{src/**/*} @{CLAUDE.md} Analyze code patterns and conventions"
     
-    # With template (recommended)
-    gemini -p "@{src/**/*} @{CLAUDE.md} $(cat ~/.claude/workflows/cli-templates/prompts/analysis/pattern.txt)"
+    # With template (recommended) - --all-files is default
+    gemini --all-files -p "@{src/**/*} @{CLAUDE.md} $(cat ~/.claude/workflows/cli-templates/prompts/analysis/pattern.txt)"
     
-    # Multi-template composition
-    gemini -p "@{src/**/*} @{CLAUDE.md} $(cat <<'EOF'
+    # Multi-template composition - --all-files is default
+    gemini --all-files -p "@{src/**/*} @{CLAUDE.md} $(cat <<'EOF'
     $(cat ~/.claude/workflows/cli-templates/prompts/analysis/architecture.txt)
     
     Additional Security Focus:
@@ -66,6 +66,11 @@ type: technical-guideline
     -   Enclose paths with spaces in quotes: `@{"My Project/src/**/*"}`.
     -   Escape special characters like brackets: `@{src/**/*\[bracket\]*}`.
 
+### ⏱️ Execution Settings
+
+-   **Default Timeout**: Bash command execution extended to **5 minutes** to handle large codebase analysis.
+-   **Content Limits**: When `--all-files` exceeds token limits, automatically fall back to selective `@` patterns.
+
 
 ###  TPL (Templates)
 
@@ -123,7 +128,7 @@ These are recommended command templates for common scenarios.
 
 -   **Multi-Template Composition**
     ```bash
-    gemini -p "@{src/**/*} @{CLAUDE.md} 
+    gemini --all-files -p "@{src/**/*} @{CLAUDE.md} 
     $(cat ~/.claude/workflows/cli-templates/prompts/analysis/pattern.txt)
 
     Additional Security Focus: