Refactor workflow to replace synthesis-specification.md with role analysis documents

- Updated references in various workflow commands to utilize role analysis documents instead of synthesis-specification.md.
- Modified CLI templates and command references to reflect the new architecture and document structure.
- Introduced conflict-resolution command to analyze and resolve conflicts between implementation plans and existing codebase.
- Deprecated synthesis role template and provided migration guidance for transitioning to the new role analysis approach.

.claude/commands/workflow/brainstorm/scrum-master.md

@@ -1,6 +1,6 @@
 ---
 name: scrum-master
-description: Generate or update scrum-master/analysis.md addressing topic-framework discussion points
+description: Generate or update scrum-master/analysis.md addressing guidance-specification discussion points
 argument-hint: "optional topic - uses existing framework if available"
 allowed-tools: Task(conceptual-planning-agent), TodoWrite(*), Read(*), Write(*)
 ---
@@ -8,10 +8,10 @@ allowed-tools: Task(conceptual-planning-agent), TodoWrite(*), Read(*), Write(*)
 ## 🎯 **Scrum Master Analysis Generator**
 
 ### Purpose
-**Specialized command for generating scrum-master/analysis.md** that addresses topic-framework.md discussion points from agile process and team collaboration perspective. Creates or updates role-specific analysis with framework references.
+**Specialized command for generating scrum-master/analysis.md** that addresses guidance-specification.md discussion points from agile process and team collaboration perspective. Creates or updates role-specific analysis with framework references.
 
 ### Core Function
-- **Framework-based Analysis**: Address each discussion point in topic-framework.md
+- **Framework-based Analysis**: Address each discussion point in guidance-specification.md
 - **Agile Process Focus**: Sprint planning, team dynamics, and delivery optimization
 - **Update Mechanism**: Create new or update existing analysis.md
 - **Agent Delegation**: Use conceptual-planning-agent for analysis generation
@@ -32,7 +32,7 @@ IF active_session EXISTS:
     session_id = get_active_session()
     brainstorm_dir = .workflow/WFS-{session}/.brainstorming/
 
-    CHECK: brainstorm_dir/topic-framework.md
+    CHECK: brainstorm_dir/guidance-specification.md
     IF EXISTS:
         framework_mode = true
         load_framework = true
@@ -73,7 +73,7 @@ ANALYSIS_MODE: {framework_mode ? "framework_based" : "standalone"}
 ## Flow Control Steps
 1. **load_topic_framework**
    - Action: Load structured topic discussion framework
-   - Command: Read(.workflow/WFS-{session}/.brainstorming/topic-framework.md)
+   - Command: Read(.workflow/WFS-{session}/.brainstorming/guidance-specification.md)
    - Output: topic_framework_content
 
 2. **load_role_template**
@@ -87,17 +87,17 @@ ANALYSIS_MODE: {framework_mode ? "framework_based" : "standalone"}
    - Output: session_context
 
 ## Analysis Requirements
-**Framework Reference**: Address all discussion points in topic-framework.md from agile process and team collaboration perspective
+**Framework Reference**: Address all discussion points in guidance-specification.md from agile process and team collaboration perspective
 **Role Focus**: Sprint planning, team dynamics, process optimization, delivery management
 **Structured Approach**: Create analysis.md addressing framework discussion points
 **Template Integration**: Apply role template guidelines within framework structure
 
 ## Expected Deliverables
 1. **analysis.md**: Comprehensive agile process analysis addressing all framework discussion points
-2. **Framework Reference**: Include @../topic-framework.md reference in analysis
+2. **Framework Reference**: Include @../guidance-specification.md reference in analysis
 
 ## Completion Criteria
-- Address each discussion point from topic-framework.md with scrum mastery expertise
+- Address each discussion point from guidance-specification.md with scrum mastery expertise
 - Provide actionable sprint planning and team facilitation strategies
 - Include process optimization and impediment removal insights
 - Reference framework document using @ notation for integration
@@ -116,7 +116,7 @@ TodoWrite({
       activeForm: "Detecting session and framework"
     },
     {
-      content: "Load topic-framework.md and session metadata for context",
+      content: "Load guidance-specification.md and session metadata for context",
       status: "pending",
       activeForm: "Loading framework and session context"
     },
@@ -144,7 +144,7 @@ TodoWrite({
 ### Framework-Based Analysis
 ```
 .workflow/WFS-{session}/.brainstorming/scrum-master/
-└── analysis.md    # Structured analysis addressing topic-framework.md discussion points
+└── analysis.md    # Structured analysis addressing guidance-specification.md discussion points
 ```
 
 ### Analysis Document Structure
@@ -152,11 +152,11 @@ TodoWrite({
 # Scrum Master Analysis: [Topic from Framework]
 
 ## Framework Reference
-**Topic Framework**: @../topic-framework.md
+**Topic Framework**: @../guidance-specification.md
 **Role Focus**: Agile Process & Team Collaboration perspective
 
 ## Discussion Points Analysis
-[Address each point from topic-framework.md with scrum mastery expertise]
+[Address each point from guidance-specification.md with scrum mastery expertise]
 
 ### Core Requirements (from framework)
 [Sprint planning and iteration breakdown perspective]
@@ -189,12 +189,12 @@ TodoWrite({
     "status": "completed",
     "framework_addressed": true,
     "output_location": ".workflow/WFS-{session}/.brainstorming/scrum-master/analysis.md",
-    "framework_reference": "@../topic-framework.md"
+    "framework_reference": "@../guidance-specification.md"
   }
 }
 ```
 
 ### Integration Points
-- **Framework Reference**: @../topic-framework.md for structured discussion points
+- **Framework Reference**: @../guidance-specification.md for structured discussion points
 - **Cross-Role Synthesis**: Agile process insights available for synthesis-report.md integration
 - **Agent Autonomy**: Independent execution with framework guidance