feat: 更新 CLI 工具配置管理，优化配置读取和保存策略

.claude/CLAUDE.md

@@ -1,23 +1,26 @@
 # Claude Instructions
 
-
-- **CLI Tools Usage**: @~/.claude/workflows/cli-tools-usage.md
 - **Coding Philosophy**: @~/.claude/workflows/coding-philosophy.md
-- **Context Requirements**: @~/.claude/workflows/context-tools.md
-- **File Modification**: @~/.claude/workflows/file-modification.md
-- **CLI Endpoints Config**: @.claude/cli-tools.json
 
 ## CLI Endpoints
 
-**Strictly follow the @.claude/cli-tools.json configuration**
+- **CLI Tools Usage**: @~/.claude/workflows/cli-tools-usage.md
+- **CLI Endpoints Config**: @~/.claude/cli-tools.json
+
+**Strictly follow the cli-tools.json configuration**
 
 Available CLI endpoints are dynamically defined by the config file:
 - Built-in tools and their enable/disable status
 - Custom API endpoints registered via the Dashboard
 - Managed through the CCW Dashboard Status page
 
+
+
 ## Tool Execution
 
+- **Context Requirements**: @~/.claude/workflows/context-tools.md
+- **File Modification**: @~/.claude/workflows/file-modification.md
+
 ### Agent Calls
 - **Always use `run_in_background: false`** for Task tool agent calls: `Task({ subagent_type: "xxx", prompt: "...", run_in_background: false })` to ensure synchronous execution and immediate result visibility
 - **TaskOutput usage**: Only use `TaskOutput({ task_id: "xxx", block: false })` + sleep loop to poll completion status. NEVER read intermediate output during agent/CLI execution - wait for final result only