feat: migrate to Gemini CLI v0.11.0-nightly with native prompt support

## Major Changes

### Gemini CLI Integration (google-gemini/gemini-cli#11228)
- Migrate from wrapper scripts to native Gemini CLI v0.11.0-nightly
- Remove `-p` flag requirement for prompt strings
- Deprecate `gemini-wrapper` and `qwen-wrapper` scripts
- Update all commands and workflows to use direct CLI syntax

### Command Syntax Updates
- **Before**: `gemini -p "CONTEXT: @**/* prompt"`
- **After**: `gemini "CONTEXT: @**/* prompt"`
- Apply to all 70+ command files and workflow templates
- Maintain backward compatibility for Qwen fallback

### File Pattern Migration
- Replace `@{CLAUDE.md}` with `@CLAUDE.md`
- Replace `@{**/*}` with `@**/*`
- Update all file references to use direct @ notation
- Remove legacy brace syntax across all documentation

### Documentation Improvements
- Reorganize `intelligent-tools-strategy.md` structure
- Add Quick Start section with decision matrix
- Enhance `--include-directories` best practices
- Add comprehensive command templates and examples
- Improve navigation with clearer section hierarchy

### Files Modified (75+ files)
- Commands: All CLI commands updated (cli/, workflow/, task/, memory/)
- Workflows: Core strategy files and templates
- Agents: CLI execution agent and doc generator
- Templates: Planning roles and tech stack guides

## Breaking Changes
- Gemini CLI v0.11.0-nightly or later required
- Old wrapper scripts no longer supported
- Legacy `@{pattern}` syntax deprecated

## Migration Guide
Users should:
1. Update Gemini CLI to v0.11.0-nightly or later
2. Remove `-p` flag from existing commands
3. Update file patterns from `@{pattern}` to `@pattern`

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>

.claude/commands/cli/analyze.md

@@ -67,24 +67,24 @@ The agent handles all phases internally (understanding, discovery, enhancement,
 
 ## File Pattern Auto-Detection
 
-Keywords trigger specific file patterns:
-- "auth" → `@{**/*auth*,**/*user*}`
-- "component" → `@{src/components/**/*,**/*.component.*}`
-- "API" → `@{**/api/**/*,**/routes/**/*}`
-- "test" → `@{**/*.test.*,**/*.spec.*}`
-- "config" → `@{*.config.*,**/config/**/*}`
-- Generic → `@{src/**/*}`
+Keywords trigger specific file patterns (each @ references one pattern):
+- "auth" → `@**/*auth* @**/*user*`
+- "component" → `@src/components/**/* @**/*.component.*`
+- "API" → `@**/api/**/* @**/routes/**/*`
+- "test" → `@**/*.test.* @**/*.spec.*`
+- "config" → `@*.config.* @**/config/**/*`
+- Generic → `@src/**/*`
 
 For complex patterns, use `rg` or MCP tools to discover files first, then execute CLI with precise file references.
 
 ## Command Template
 
 ```bash
-cd . && ~/.claude/scripts/gemini-wrapper -p "
+cd . && gemini -p "
 PURPOSE: [analysis goal from target]
 TASK: [auto-detected analysis type]
 MODE: analysis
-CONTEXT: @{CLAUDE.md} [auto-detected file patterns]
+CONTEXT: @CLAUDE.md [auto-detected file patterns]
 EXPECTED: Insights, patterns, recommendations (NO code modification)
 RULES: [auto-selected template] | Focus on [analysis aspect]
 "
@@ -112,7 +112,7 @@ RULES: [auto-selected template] | Focus on [analysis aspect]
 
 **Architecture Analysis**:
 ```bash
-/cli:analyze --tool qwen "component architecture"
+/cli:analyze --tool qwen -p "component architecture"
 # Executes: Qwen with component file patterns
 # Returns: Architecture review, design patterns, improvement suggestions
 ```