feat: migrate to Gemini CLI v0.11.0-nightly with native prompt support

## Major Changes

### Gemini CLI Integration (google-gemini/gemini-cli#11228)
- Migrate from wrapper scripts to native Gemini CLI v0.11.0-nightly
- Remove `-p` flag requirement for prompt strings
- Deprecate `gemini-wrapper` and `qwen-wrapper` scripts
- Update all commands and workflows to use direct CLI syntax

### Command Syntax Updates
- **Before**: `gemini -p "CONTEXT: @**/* prompt"`
- **After**: `gemini "CONTEXT: @**/* prompt"`
- Apply to all 70+ command files and workflow templates
- Maintain backward compatibility for Qwen fallback

### File Pattern Migration
- Replace `@{CLAUDE.md}` with `@CLAUDE.md`
- Replace `@{**/*}` with `@**/*`
- Update all file references to use direct @ notation
- Remove legacy brace syntax across all documentation

### Documentation Improvements
- Reorganize `intelligent-tools-strategy.md` structure
- Add Quick Start section with decision matrix
- Enhance `--include-directories` best practices
- Add comprehensive command templates and examples
- Improve navigation with clearer section hierarchy

### Files Modified (75+ files)
- Commands: All CLI commands updated (cli/, workflow/, task/, memory/)
- Workflows: Core strategy files and templates
- Agents: CLI execution agent and doc generator
- Templates: Planning roles and tech stack guides

## Breaking Changes
- Gemini CLI v0.11.0-nightly or later required
- Old wrapper scripts no longer supported
- Legacy `@{pattern}` syntax deprecated

## Migration Guide
Users should:
1. Update Gemini CLI to v0.11.0-nightly or later
2. Remove `-p` flag from existing commands
3. Update file patterns from `@{pattern}` to `@pattern`

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>

.claude/commands/memory/docs.md

@@ -394,7 +394,7 @@ bash(
       },
       {
         "step": "analyze_module_tree",
-        "command": "bash(cd src/modules && ~/.claude/scripts/gemini-wrapper -p \"PURPOSE: Analyze module structure\\nTASK: Generate documentation outline\\nMODE: analysis\\nCONTEXT: @{**/*} [target_folders]\\nEXPECTED: Structure outline\\nRULES: Analyze only\")",
+        "command": "bash(cd src/modules && gemini \"PURPOSE: Analyze module structure\\nTASK: Generate documentation outline\\nMODE: analysis\\nCONTEXT: @**/* [target_folders]\\nEXPECTED: Structure outline\\nRULES: Analyze only\")",
         "output_to": "tree_outline",
         "note": "CLI for analysis only"
       }
@@ -490,7 +490,7 @@ bash(
           "CLI writes documentation to .workflow/docs/src/modules/",
           "Maintains directory structure mirroring"
         ],
-        "command": "bash(cd src/modules && ~/.claude/scripts/gemini-wrapper --approval-mode yolo -p \"PURPOSE: Generate module docs\\nTASK: Create documentation files in .workflow/docs/src/modules/\\nMODE: write\\nCONTEXT: @{**/*} [target_folders] [existing_module_docs]\\nEXPECTED: API.md and README.md in .workflow/docs/src/modules/\\nRULES: Mirror source structure, generate complete docs\")",
+        "command": "bash(cd src/modules && gemini --approval-mode yolo \"PURPOSE: Generate module docs\\nTASK: Create documentation files in .workflow/docs/src/modules/\\nMODE: write\\nCONTEXT: @**/* [target_folders] [existing_module_docs]\\nEXPECTED: API.md and README.md in .workflow/docs/src/modules/\\nRULES: Mirror source structure, generate complete docs\")",
         "depends_on": [1],
         "output": "generated_docs"
       }
@@ -533,7 +533,7 @@ bash(
       },
       {
         "step": "analyze_project",
-        "command": "bash(~/.claude/scripts/gemini-wrapper -p \"PURPOSE: Analyze project structure\\nTASK: Extract overview from modules\\nMODE: analysis\\nCONTEXT: [all_module_docs]\\nEXPECTED: Project outline\")",
+        "command": "bash(gemini \"PURPOSE: Analyze project structure\\nTASK: Extract overview from modules\\nMODE: analysis\\nCONTEXT: [all_module_docs]\\nEXPECTED: Project outline\")",
         "output_to": "project_outline"
       }
     ],
@@ -583,7 +583,7 @@ bash(
       },
       {
         "step": "analyze_architecture_and_examples",
-        "command": "bash(~/.claude/scripts/gemini-wrapper -p \"PURPOSE: Analyze system architecture and generate examples\\nTASK: Synthesize architectural overview and usage patterns\\nMODE: analysis\\nCONTEXT: [all_docs]\\nEXPECTED: Architecture outline + Examples outline\")",
+        "command": "bash(gemini \"PURPOSE: Analyze system architecture and generate examples\\nTASK: Synthesize architectural overview and usage patterns\\nMODE: analysis\\nCONTEXT: [all_docs]\\nEXPECTED: Architecture outline + Examples outline\")",
         "output_to": "arch_examples_outline"
       }
     ],
@@ -645,7 +645,7 @@ bash(
       },
       {
         "step": "analyze_api",
-        "command": "bash(~/.claude/scripts/gemini-wrapper -p \"PURPOSE: Document HTTP API\\nTASK: Analyze API endpoints\\nMODE: analysis\\nCONTEXT: @{src/api/**/*} [endpoint_discovery]\\nEXPECTED: API outline\")",
+        "command": "bash(gemini \"PURPOSE: Document HTTP API\\nTASK: Analyze API endpoints\\nMODE: analysis\\nCONTEXT: @src/api/**/* [endpoint_discovery]\\nEXPECTED: API outline\")",
         "output_to": "api_outline"
       }
     ],

.claude/commands/memory/load.md

@@ -5,7 +5,7 @@ argument-hint: "[--tool gemini|qwen] \"task context description\""
 allowed-tools: Task(*), Bash(*)
 examples:
   - /memory:load "在当前前端基础上开发用户认证功能"
-  - /memory:load --tool qwen "重构支付模块API"
+  - /memory:load --tool qwen -p "重构支付模块API"
 ---
 
 # Memory Load Command (/memory:load)
@@ -140,7 +140,7 @@ cd . && ~/.claude/scripts/${tool}-wrapper -p "
 PURPOSE: Extract project core context for task: ${task_description}
 TASK: Analyze project architecture, tech stack, key patterns, relevant files
 MODE: analysis
-CONTEXT: @{CLAUDE.md,README.md,${discovered_files}}
+CONTEXT: @CLAUDE.md,README.md @${discovered_files}
 EXPECTED: Structured project summary and integration point analysis
 RULES:
 - Focus on task-relevant core information
@@ -212,7 +212,7 @@ Before returning:
 ### Example 2: Using Qwen Tool
 
 ```bash
-/memory:load --tool qwen "重构支付模块API"
+/memory:load --tool qwen -p "重构支付模块API"
 ```
 
 Agent uses Qwen CLI for analysis, returns same structured package.