feat: migrate to Gemini CLI v0.11.0-nightly with native prompt support

## Major Changes

### Gemini CLI Integration (google-gemini/gemini-cli#11228)
- Migrate from wrapper scripts to native Gemini CLI v0.11.0-nightly
- Remove `-p` flag requirement for prompt strings
- Deprecate `gemini-wrapper` and `qwen-wrapper` scripts
- Update all commands and workflows to use direct CLI syntax

### Command Syntax Updates
- **Before**: `gemini -p "CONTEXT: @**/* prompt"`
- **After**: `gemini "CONTEXT: @**/* prompt"`
- Apply to all 70+ command files and workflow templates
- Maintain backward compatibility for Qwen fallback

### File Pattern Migration
- Replace `@{CLAUDE.md}` with `@CLAUDE.md`
- Replace `@{**/*}` with `@**/*`
- Update all file references to use direct @ notation
- Remove legacy brace syntax across all documentation

### Documentation Improvements
- Reorganize `intelligent-tools-strategy.md` structure
- Add Quick Start section with decision matrix
- Enhance `--include-directories` best practices
- Add comprehensive command templates and examples
- Improve navigation with clearer section hierarchy

### Files Modified (75+ files)
- Commands: All CLI commands updated (cli/, workflow/, task/, memory/)
- Workflows: Core strategy files and templates
- Agents: CLI execution agent and doc generator
- Templates: Planning roles and tech stack guides

## Breaking Changes
- Gemini CLI v0.11.0-nightly or later required
- Old wrapper scripts no longer supported
- Legacy `@{pattern}` syntax deprecated

## Migration Guide
Users should:
1. Update Gemini CLI to v0.11.0-nightly or later
2. Remove `-p` flag from existing commands
3. Update file patterns from `@{pattern}` to `@pattern`

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>

.claude/workflows/mcp-tool-strategy.md

@@ -86,9 +86,9 @@ mcp__code-index__search_code_advanced(pattern="async.*function", file_pattern="*
 mcp__exa__get_code_context_exa(query="TypeScript async patterns", tokensNum="dynamic")
 
 # 3. Analyze with Gemini
-cd "src/async" && ~/.claude/scripts/gemini-wrapper -p "
+cd "src/async" && gemini "
 PURPOSE: Understand async patterns
-CONTEXT: Code index results + Exa context + @{src/async/**/*}
+CONTEXT: Code index results + Exa context + @src/async/**/*
 EXPECTED: Pattern analysis
 RULES: Focus on TypeScript best practices
 "
@@ -134,7 +134,7 @@ codex -C src/async --full-auto exec "Apply modern async patterns" -s danger-full
 mcp__code-index__search_code_advanced(pattern="router|routing", file_pattern="*.ts")
 mcp__exa__get_code_context_exa(query="Next.js 14 app router", tokensNum="dynamic")
 mcp__exa__web_search_exa(query="Next.js 14 best practices 2024", numResults=3)
-cd "src/app" && ~/.claude/scripts/gemini-wrapper -p "Learn Next.js patterns"
+cd "src/app" && gemini "Learn Next.js patterns"
 ```
 
 ### Debugging
@@ -153,7 +153,7 @@ mcp__code-index__refresh_index()  # 刷新索引
 mcp__code-index__find_files(pattern="*auth*")  # Find auth-related files
 mcp__code-index__search_code_advanced(pattern="function.*auth", file_pattern="*.ts")  # Find auth functions
 mcp__code-index__get_file_summary(file_path="src/auth/index.ts")  # Understand structure
-cd "src/auth" && ~/.claude/scripts/gemini-wrapper -p "Analyze auth architecture"
+cd "src/auth" && gemini "Analyze auth architecture"
 ```
 
 ### Project Setup Workflow