feat: Add task-specific path management system for precise CLI analysis

- Add 'paths' field to task JSON schema with semicolon-separated concrete paths
- Create read-task-paths.sh script to convert paths to Gemini @ format
- Update all agents to use task-specific paths instead of --all-files
- Integrate get_modules_by_depth.sh for project structure discovery
- Update workflow planning to populate paths field automatically
- Enhance execute command to pass task-specific paths to agents
- Update documentation for new path management system

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

.claude/agents/conceptual-planning-agent.md

@@ -53,6 +53,7 @@ def handle_analysis_markers(prompt):
     if "[GEMINI_CLI_REQUIRED]" in prompt:
         for dimension in dimensions:
             result = execute_gemini_cli(
+                command=f"gemini -p \"$(.claude/scripts/read-task-paths.sh [task-json-file]) @{{CLAUDE.md}} {dimension}\"",
                 dimension=dimension,
                 role_context=role,
                 topic=topic
@@ -61,6 +62,7 @@ def handle_analysis_markers(prompt):
     
     elif "[CODEX_CLI_REQUIRED]" in prompt:
         result = execute_codex_cli(
+            command=f"codex --full-auto exec \"$(.claude/scripts/read-task-paths.sh [task-json-file]) {topic}\"",
             autonomous_analysis=True,
             role_context=role, 
             topic=topic