feat: Add task-specific path management system for precise CLI analysis

- Add 'paths' field to task JSON schema with semicolon-separated concrete paths
- Create read-task-paths.sh script to convert paths to Gemini @ format
- Update all agents to use task-specific paths instead of --all-files
- Integrate get_modules_by_depth.sh for project structure discovery
- Update workflow planning to populate paths field automatically
- Enhance execute command to pass task-specific paths to agents
- Update documentation for new path management system

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

.claude/scripts/read-task-paths.sh

@@ -0,0 +1,56 @@
+#!/bin/bash
+# Read paths field from task JSON and convert to Gemini @ format
+# Usage: read-task-paths.sh [task-json-file]
+
+TASK_FILE="$1"
+
+if [ -z "$TASK_FILE" ]; then
+    echo "Usage: read-task-paths.sh [task-json-file]" >&2
+    exit 1
+fi
+
+if [ ! -f "$TASK_FILE" ]; then
+    echo "Error: Task file '$TASK_FILE' not found" >&2
+    exit 1
+fi
+
+# Extract paths field from JSON
+paths=$(grep -o '"paths":[[:space:]]*"[^"]*"' "$TASK_FILE" | sed 's/"paths":[[:space:]]*"\([^"]*\)"/\1/')
+
+if [ -z "$paths" ]; then
+    # No paths field found, return empty @ format
+    echo "@{}"
+    exit 0
+fi
+
+# Convert semicolon-separated paths to comma-separated @ format
+formatted_paths=$(echo "$paths" | sed 's/;/,/g')
+
+# For directories, append /**/* to get all files
+# For files (containing .), keep as-is
+IFS=',' read -ra path_array <<< "$formatted_paths"
+result_paths=()
+
+for path in "${path_array[@]}"; do
+    # Trim whitespace
+    path=$(echo "$path" | xargs)
+    
+    if [ -n "$path" ]; then
+        # Check if path is a directory (no extension) or file (has extension)
+        if [[ "$path" == *.* ]]; then
+            # File path - keep as is
+            result_paths+=("$path")
+        else
+            # Directory path - add wildcard expansion
+            result_paths+=("$path/**/*")
+        fi
+    fi
+done
+
+# Output Gemini @ format
+printf "@{"
+printf "%s" "${result_paths[0]}"
+for i in "${result_paths[@]:1}"; do
+    printf ",%s" "$i"
+done
+printf "}"