feat: implement ignore patterns and extension filters in CodexLens

- Added tests to ensure loading of ignore patterns and extension filters from settings.
- Implemented functionality to respect ignore patterns and extension filters during file indexing.
- Created integration tests for CodexLens ignore-pattern configuration routes.
- Added a new AdvancedTab component with tests for managing ignore patterns and extension filters.
- Established a comprehensive branding naming system for the Maestro project, including guidelines for package names, CLI commands, and directory structure.

.codex/skills/team-planex/SKILL.md

@@ -502,40 +502,3 @@ if (plannerAgent) {
 | `check` / `status` | Show progress: planned / executing / completed / failed counts |
 | `resume` / `continue` | Re-enter loop from Phase 2 |
 
-
----
-
-## Coordinator Role Constraints (Main Agent)
-
-**CRITICAL**: The coordinator (main agent executing this skill) is responsible for **orchestration only**, NOT implementation.
-
-15. **Coordinator Does NOT Execute Code**: The main agent MUST NOT write, modify, or implement any code directly. All implementation work is delegated to spawned team agents. The coordinator only:
-    - Spawns agents with task assignments
-    - Waits for agent callbacks
-    - Merges results and coordinates workflow
-    - Manages workflow transitions between phases
-
-16. **Patient Waiting is Mandatory**: Agent execution takes significant time (typically 10-30 minutes per phase, sometimes longer). The coordinator MUST:
-    - Wait patiently for `wait()` calls to complete
-    - NOT skip workflow steps due to perceived delays
-    - NOT assume agents have failed just because they're taking time
-    - Trust the timeout mechanisms defined in the skill
-
-17. **Use send_input for Clarification**: When agents need guidance or appear stuck, the coordinator MUST:
-    - Use `send_input()` to ask questions or provide clarification
-    - NOT skip the agent or move to next phase prematurely
-    - Give agents opportunity to respond before escalating
-    - Example: `send_input({ id: agent_id, message: "Please provide status update or clarify blockers" })`
-
-18. **No Workflow Shortcuts**: The coordinator MUST NOT:
-    - Skip phases or stages defined in the workflow
-    - Bypass required approval or review steps
-    - Execute dependent tasks before prerequisites complete
-    - Assume task completion without explicit agent callback
-    - Make up or fabricate agent results
-
-19. **Respect Long-Running Processes**: This is a complex multi-agent workflow that requires patience:
-    - Total execution time may range from 30-90 minutes or longer
-    - Each phase may take 10-30 minutes depending on complexity
-    - The coordinator must remain active and attentive throughout the entire process
-    - Do not terminate or skip steps due to time concerns

ccw/frontend/src/components/codexlens/AdvancedTab.test.tsx

@@ -0,0 +1,154 @@
+import { beforeEach, describe, expect, it, vi } from 'vitest';
+import { fireEvent } from '@testing-library/react';
+import { render, screen, waitFor } from '@/test/i18n';
+import { AdvancedTab } from './AdvancedTab';
+
+vi.mock('@/hooks', async (importOriginal) => {
+  const actual = await importOriginal<typeof import('@/hooks')>();
+  return {
+    ...actual,
+    useCodexLensEnv: vi.fn(),
+    useUpdateCodexLensEnv: vi.fn(),
+    useCodexLensIgnorePatterns: vi.fn(),
+    useUpdateIgnorePatterns: vi.fn(),
+    useNotifications: vi.fn(),
+  };
+});
+
+import {
+  useCodexLensEnv,
+  useUpdateCodexLensEnv,
+  useCodexLensIgnorePatterns,
+  useUpdateIgnorePatterns,
+  useNotifications,
+} from '@/hooks';
+
+const mockRefetchEnv = vi.fn().mockResolvedValue(undefined);
+const mockRefetchPatterns = vi.fn().mockResolvedValue(undefined);
+const mockUpdateEnv = vi.fn().mockResolvedValue({ success: true, message: 'Saved' });
+const mockUpdatePatterns = vi.fn().mockResolvedValue({
+  success: true,
+  patterns: ['dist', 'frontend/dist'],
+  extensionFilters: ['*.min.js', 'frontend/skip.ts'],
+  defaults: {
+    patterns: ['dist', 'build'],
+    extensionFilters: ['*.min.js'],
+  },
+});
+const mockToastSuccess = vi.fn();
+const mockToastError = vi.fn();
+
+function setupDefaultMocks() {
+  vi.mocked(useCodexLensEnv).mockReturnValue({
+    data: { success: true, env: {}, settings: {}, raw: '', path: '~/.codexlens/.env' },
+    raw: '',
+    env: {},
+    settings: {},
+    isLoading: false,
+    error: null,
+    refetch: mockRefetchEnv,
+  });
+
+  vi.mocked(useUpdateCodexLensEnv).mockReturnValue({
+    updateEnv: mockUpdateEnv,
+    isUpdating: false,
+    error: null,
+  });
+
+  vi.mocked(useCodexLensIgnorePatterns).mockReturnValue({
+    data: {
+      success: true,
+      patterns: ['dist', 'coverage'],
+      extensionFilters: ['*.min.js', '*.map'],
+      defaults: {
+        patterns: ['dist', 'build', 'coverage'],
+        extensionFilters: ['*.min.js', '*.map'],
+      },
+    },
+    patterns: ['dist', 'coverage'],
+    extensionFilters: ['*.min.js', '*.map'],
+    defaults: {
+      patterns: ['dist', 'build', 'coverage'],
+      extensionFilters: ['*.min.js', '*.map'],
+    },
+    isLoading: false,
+    error: null,
+    refetch: mockRefetchPatterns,
+  });
+
+  vi.mocked(useUpdateIgnorePatterns).mockReturnValue({
+    updatePatterns: mockUpdatePatterns,
+    isUpdating: false,
+    error: null,
+  });
+
+  vi.mocked(useNotifications).mockReturnValue({
+    success: mockToastSuccess,
+    error: mockToastError,
+  } as ReturnType<typeof useNotifications>);
+}
+
+describe('AdvancedTab', () => {
+  beforeEach(() => {
+    vi.clearAllMocks();
+    setupDefaultMocks();
+  });
+
+  it('renders existing filter configuration', () => {
+    render(<AdvancedTab enabled={true} />);
+
+    expect(screen.getByLabelText(/Ignored directories \/ paths/i)).toHaveValue('dist\ncoverage');
+    expect(screen.getByLabelText(/Skipped files \/ globs/i)).toHaveValue('*.min.js\n*.map');
+    expect(screen.getByText(/Directory filters: 2/i)).toBeInTheDocument();
+    expect(screen.getByText(/File filters: 2/i)).toBeInTheDocument();
+  });
+
+  it('saves parsed filter configuration', async () => {
+    render(<AdvancedTab enabled={true} />);
+
+    const ignorePatternsInput = screen.getByLabelText(/Ignored directories \/ paths/i);
+    const extensionFiltersInput = screen.getByLabelText(/Skipped files \/ globs/i);
+
+    fireEvent.change(ignorePatternsInput, { target: { value: 'dist,\nfrontend/dist' } });
+    fireEvent.change(extensionFiltersInput, { target: { value: '*.min.js,\nfrontend/skip.ts' } });
+    fireEvent.click(screen.getByRole('button', { name: /Save filters/i }));
+
+    await waitFor(() => {
+      expect(mockUpdatePatterns).toHaveBeenCalledWith({
+        patterns: ['dist', 'frontend/dist'],
+        extensionFilters: ['*.min.js', 'frontend/skip.ts'],
+      });
+    });
+    expect(mockRefetchPatterns).toHaveBeenCalled();
+  });
+
+  it('restores default filter values before saving', async () => {
+    render(<AdvancedTab enabled={true} />);
+
+    fireEvent.click(screen.getByRole('button', { name: /Restore defaults/i }));
+
+    expect(screen.getByLabelText(/Ignored directories \/ paths/i)).toHaveValue('dist\nbuild\ncoverage');
+    expect(screen.getByLabelText(/Skipped files \/ globs/i)).toHaveValue('*.min.js\n*.map');
+
+    fireEvent.click(screen.getByRole('button', { name: /Save filters/i }));
+
+    await waitFor(() => {
+      expect(mockUpdatePatterns).toHaveBeenCalledWith({
+        patterns: ['dist', 'build', 'coverage'],
+        extensionFilters: ['*.min.js', '*.map'],
+      });
+    });
+  });
+
+  it('blocks invalid filter entries before saving', async () => {
+    render(<AdvancedTab enabled={true} />);
+
+    fireEvent.change(screen.getByLabelText(/Ignored directories \/ paths/i), {
+      target: { value: 'bad pattern!' },
+    });
+    fireEvent.click(screen.getByRole('button', { name: /Save filters/i }));
+
+    expect(mockUpdatePatterns).not.toHaveBeenCalled();
+    expect(screen.getByText(/Invalid ignore patterns/i)).toBeInTheDocument();
+  });
+});

ccw/frontend/src/components/codexlens/AdvancedTab.tsx

@@ -5,13 +5,18 @@
 
 import { useState, useEffect } from 'react';
 import { useIntl } from 'react-intl';
-import { Save, RefreshCw, AlertTriangle, FileCode, AlertCircle } from 'lucide-react';
+import { Save, RefreshCw, AlertTriangle, FileCode, AlertCircle, Filter } from 'lucide-react';
 import { Card } from '@/components/ui/Card';
 import { Textarea } from '@/components/ui/Textarea';
 import { Button } from '@/components/ui/Button';
 import { Label } from '@/components/ui/Label';
 import { Badge } from '@/components/ui/Badge';
-import { useCodexLensEnv, useUpdateCodexLensEnv } from '@/hooks';
+import {
+  useCodexLensEnv,
+  useCodexLensIgnorePatterns,
+  useUpdateCodexLensEnv,
+  useUpdateIgnorePatterns,
+} from '@/hooks';
 import { useNotifications } from '@/hooks';
 import { cn } from '@/lib/utils';
 import { CcwToolsCard } from './CcwToolsCard';
@@ -22,6 +27,28 @@ interface AdvancedTabProps {
 
 interface FormErrors {
   env?: string;
+  ignorePatterns?: string;
+  extensionFilters?: string;
+}
+
+const FILTER_ENTRY_PATTERN = /^[-\w.*\\/]+$/;
+
+function parseListEntries(text: string): string[] {
+  return text
+    .split(/[\n,]/)
+    .map((entry) => entry.trim())
+    .filter(Boolean);
+}
+
+function normalizeListEntries(entries: string[]): string {
+  return entries
+    .map((entry) => entry.trim())
+    .filter(Boolean)
+    .join('\n');
+}
+
+function normalizeListText(text: string): string {
+  return normalizeListEntries(parseListEntries(text));
 }
 
 export function AdvancedTab({ enabled = true }: AdvancedTabProps) {
@@ -37,14 +64,32 @@ export function AdvancedTab({ enabled = true }: AdvancedTabProps) {
     refetch,
   } = useCodexLensEnv({ enabled });
 
+  const {
+    patterns,
+    extensionFilters,
+    defaults,
+    isLoading: isLoadingPatterns,
+    error: patternsError,
+    refetch: refetchPatterns,
+  } = useCodexLensIgnorePatterns({ enabled });
+
   const { updateEnv, isUpdating } = useUpdateCodexLensEnv();
+  const { updatePatterns, isUpdating: isUpdatingPatterns } = useUpdateIgnorePatterns();
 
   // Form state
   const [envInput, setEnvInput] = useState('');
+  const [ignorePatternsInput, setIgnorePatternsInput] = useState('');
+  const [extensionFiltersInput, setExtensionFiltersInput] = useState('');
   const [errors, setErrors] = useState<FormErrors>({});
   const [hasChanges, setHasChanges] = useState(false);
+  const [hasFilterChanges, setHasFilterChanges] = useState(false);
   const [showWarning, setShowWarning] = useState(false);
 
+  const currentIgnorePatterns = patterns ?? [];
+  const currentExtensionFilters = extensionFilters ?? [];
+  const defaultIgnorePatterns = defaults?.patterns ?? [];
+  const defaultExtensionFilters = defaults?.extensionFilters ?? [];
+
   // Initialize form from env - handles both undefined (loading) and empty string (empty file)
   // The hook returns raw directly, so we check if it's been set (not undefined means data loaded)
   useEffect(() => {
@@ -58,6 +103,31 @@ export function AdvancedTab({ enabled = true }: AdvancedTabProps) {
     }
   }, [raw, isLoadingEnv]);
 
+  useEffect(() => {
+    if (!isLoadingPatterns) {
+      const nextIgnorePatterns = patterns ?? [];
+      const nextExtensionFilters = extensionFilters ?? [];
+      setIgnorePatternsInput(nextIgnorePatterns.join('\n'));
+      setExtensionFiltersInput(nextExtensionFilters.join('\n'));
+      setErrors((prev) => ({
+        ...prev,
+        ignorePatterns: undefined,
+        extensionFilters: undefined,
+      }));
+      setHasFilterChanges(false);
+    }
+  }, [extensionFilters, isLoadingPatterns, patterns]);
+
+  const updateFilterChangeState = (nextIgnorePatternsInput: string, nextExtensionFiltersInput: string) => {
+    const normalizedCurrentIgnorePatterns = normalizeListEntries(currentIgnorePatterns);
+    const normalizedCurrentExtensionFilters = normalizeListEntries(currentExtensionFilters);
+
+    setHasFilterChanges(
+      normalizeListText(nextIgnorePatternsInput) !== normalizedCurrentIgnorePatterns
+      || normalizeListText(nextExtensionFiltersInput) !== normalizedCurrentExtensionFilters
+    );
+  };
+
   const handleEnvChange = (value: string) => {
     setEnvInput(value);
     // Check if there are changes - compare with raw value (handle undefined as empty)
@@ -69,6 +139,22 @@ export function AdvancedTab({ enabled = true }: AdvancedTabProps) {
     }
   };
 
+  const handleIgnorePatternsChange = (value: string) => {
+    setIgnorePatternsInput(value);
+    updateFilterChangeState(value, extensionFiltersInput);
+    if (errors.ignorePatterns) {
+      setErrors((prev) => ({ ...prev, ignorePatterns: undefined }));
+    }
+  };
+
+  const handleExtensionFiltersChange = (value: string) => {
+    setExtensionFiltersInput(value);
+    updateFilterChangeState(ignorePatternsInput, value);
+    if (errors.extensionFilters) {
+      setErrors((prev) => ({ ...prev, extensionFilters: undefined }));
+    }
+  };
+
   const parseEnvVariables = (text: string): Record<string, string> => {
     const envObj: Record<string, string> = {};
     const lines = text.split('\n');
@@ -101,10 +187,50 @@ export function AdvancedTab({ enabled = true }: AdvancedTabProps) {
       );
     }
 
-    setErrors(newErrors);
+    setErrors((prev) => ({ ...prev, env: newErrors.env }));
     return Object.keys(newErrors).length === 0;
   };
 
+  const validateFilterForm = (): boolean => {
+    const nextErrors: Pick<FormErrors, 'ignorePatterns' | 'extensionFilters'> = {};
+    const parsedIgnorePatterns = parseListEntries(ignorePatternsInput);
+    const parsedExtensionFilters = parseListEntries(extensionFiltersInput);
+
+    const invalidIgnorePatterns = parsedIgnorePatterns.filter(
+      (entry) => !FILTER_ENTRY_PATTERN.test(entry)
+    );
+    if (invalidIgnorePatterns.length > 0) {
+      nextErrors.ignorePatterns = formatMessage(
+        {
+          id: 'codexlens.advanced.validation.invalidIgnorePatterns',
+          defaultMessage: 'Invalid ignore patterns: {values}',
+        },
+        { values: invalidIgnorePatterns.join(', ') }
+      );
+    }
+
+    const invalidExtensionFilters = parsedExtensionFilters.filter(
+      (entry) => !FILTER_ENTRY_PATTERN.test(entry)
+    );
+    if (invalidExtensionFilters.length > 0) {
+      nextErrors.extensionFilters = formatMessage(
+        {
+          id: 'codexlens.advanced.validation.invalidExtensionFilters',
+          defaultMessage: 'Invalid file filters: {values}',
+        },
+        { values: invalidExtensionFilters.join(', ') }
+      );
+    }
+
+    setErrors((prev) => ({
+      ...prev,
+      ignorePatterns: nextErrors.ignorePatterns,
+      extensionFilters: nextErrors.extensionFilters,
+    }));
+
+    return Object.values(nextErrors).every((value) => !value);
+  };
+
   const handleSave = async () => {
     if (!validateForm()) {
       return;
@@ -138,12 +264,68 @@ export function AdvancedTab({ enabled = true }: AdvancedTabProps) {
   const handleReset = () => {
     // Reset to current raw value (handle undefined as empty)
     setEnvInput(raw ?? '');
-    setErrors({});
+    setErrors((prev) => ({ ...prev, env: undefined }));
     setHasChanges(false);
     setShowWarning(false);
   };
 
+  const handleSaveFilters = async () => {
+    if (!validateFilterForm()) {
+      return;
+    }
+
+    const parsedIgnorePatterns = parseListEntries(ignorePatternsInput);
+    const parsedExtensionFilters = parseListEntries(extensionFiltersInput);
+
+    try {
+      const result = await updatePatterns({
+        patterns: parsedIgnorePatterns,
+        extensionFilters: parsedExtensionFilters,
+      });
+
+      if (result.success) {
+        setIgnorePatternsInput((result.patterns ?? parsedIgnorePatterns).join('\n'));
+        setExtensionFiltersInput((result.extensionFilters ?? parsedExtensionFilters).join('\n'));
+        setHasFilterChanges(false);
+        setErrors((prev) => ({
+          ...prev,
+          ignorePatterns: undefined,
+          extensionFilters: undefined,
+        }));
+        await refetchPatterns();
+      }
+    } catch {
+      // Hook-level mutation already reports the error.
+    }
+  };
+
+  const handleResetFilters = () => {
+    setIgnorePatternsInput(currentIgnorePatterns.join('\n'));
+    setExtensionFiltersInput(currentExtensionFilters.join('\n'));
+    setErrors((prev) => ({
+      ...prev,
+      ignorePatterns: undefined,
+      extensionFilters: undefined,
+    }));
+    setHasFilterChanges(false);
+  };
+
+  const handleRestoreDefaultFilters = () => {
+    const defaultIgnoreText = defaultIgnorePatterns.join('\n');
+    const defaultExtensionText = defaultExtensionFilters.join('\n');
+
+    setIgnorePatternsInput(defaultIgnoreText);
+    setExtensionFiltersInput(defaultExtensionText);
+    setErrors((prev) => ({
+      ...prev,
+      ignorePatterns: undefined,
+      extensionFilters: undefined,
+    }));
+    updateFilterChangeState(defaultIgnoreText, defaultExtensionText);
+  };
+
   const isLoading = isLoadingEnv;
+  const isLoadingFilters = isLoadingPatterns;
 
   // Get current env variables as array for display
   const currentEnvVars = env
@@ -242,6 +424,204 @@ export function AdvancedTab({ enabled = true }: AdvancedTabProps) {
       {/* CCW Tools Card */}
       <CcwToolsCard />
 
+      {/* Index Filters */}
+      <Card className="p-6">
+        <div className="flex flex-col gap-3 mb-4 lg:flex-row lg:items-center lg:justify-between">
+          <div className="flex items-center gap-2">
+            <Filter className="w-5 h-5 text-muted-foreground" />
+            <h3 className="text-lg font-semibold text-foreground">
+              {formatMessage({
+                id: 'codexlens.advanced.indexFilters',
+                defaultMessage: 'Index Filters',
+              })}
+            </h3>
+          </div>
+          <div className="flex flex-wrap items-center gap-2">
+            <Badge variant="outline" className="text-xs">
+              {formatMessage(
+                {
+                  id: 'codexlens.advanced.ignorePatternCount',
+                  defaultMessage: 'Directory filters: {count}',
+                },
+                { count: currentIgnorePatterns.length }
+              )}
+            </Badge>
+            <Badge variant="outline" className="text-xs">
+              {formatMessage(
+                {
+                  id: 'codexlens.advanced.extensionFilterCount',
+                  defaultMessage: 'File filters: {count}',
+                },
+                { count: currentExtensionFilters.length }
+              )}
+            </Badge>
+          </div>
+        </div>
+
+        <div className="space-y-4">
+          {patternsError && (
+            <div className="rounded-md border border-destructive/20 bg-destructive/5 p-3">
+              <div className="flex items-start gap-2">
+                <AlertCircle className="w-4 h-4 mt-0.5 text-destructive" />
+                <div>
+                  <p className="text-sm font-medium text-destructive">
+                    {formatMessage({
+                      id: 'codexlens.advanced.filtersLoadError',
+                      defaultMessage: 'Unable to load current filter settings',
+                    })}
+                  </p>
+                  <p className="text-xs text-destructive/80 mt-1">{patternsError.message}</p>
+                </div>
+              </div>
+            </div>
+          )}
+
+          <div className="grid gap-4 xl:grid-cols-2">
+            <div className="space-y-2">
+              <Label htmlFor="ignore-patterns-input">
+                {formatMessage({
+                  id: 'codexlens.advanced.ignorePatterns',
+                  defaultMessage: 'Ignored directories / paths',
+                })}
+              </Label>
+              <Textarea
+                id="ignore-patterns-input"
+                value={ignorePatternsInput}
+                onChange={(event) => handleIgnorePatternsChange(event.target.value)}
+                placeholder={formatMessage({
+                  id: 'codexlens.advanced.ignorePatternsPlaceholder',
+                  defaultMessage: 'dist\nfrontend/dist\ncoverage',
+                })}
+                className={cn(
+                  'min-h-[220px] font-mono text-sm',
+                  errors.ignorePatterns && 'border-destructive focus-visible:ring-destructive'
+                )}
+                disabled={isLoadingFilters || isUpdatingPatterns}
+              />
+              {errors.ignorePatterns && (
+                <p className="text-sm text-destructive">{errors.ignorePatterns}</p>
+              )}
+              <p className="text-xs text-muted-foreground">
+                {formatMessage({
+                  id: 'codexlens.advanced.ignorePatternsHint',
+                  defaultMessage: 'One entry per line. Supports exact names, relative paths, and glob patterns.',
+                })}
+              </p>
+            </div>
+
+            <div className="space-y-2">
+              <Label htmlFor="extension-filters-input">
+                {formatMessage({
+                  id: 'codexlens.advanced.extensionFilters',
+                  defaultMessage: 'Skipped files / globs',
+                })}
+              </Label>
+              <Textarea
+                id="extension-filters-input"
+                value={extensionFiltersInput}
+                onChange={(event) => handleExtensionFiltersChange(event.target.value)}
+                placeholder={formatMessage({
+                  id: 'codexlens.advanced.extensionFiltersPlaceholder',
+                  defaultMessage: '*.min.js\n*.map\npackage-lock.json',
+                })}
+                className={cn(
+                  'min-h-[220px] font-mono text-sm',
+                  errors.extensionFilters && 'border-destructive focus-visible:ring-destructive'
+                )}
+                disabled={isLoadingFilters || isUpdatingPatterns}
+              />
+              {errors.extensionFilters && (
+                <p className="text-sm text-destructive">{errors.extensionFilters}</p>
+              )}
+              <p className="text-xs text-muted-foreground">
+                {formatMessage({
+                  id: 'codexlens.advanced.extensionFiltersHint',
+                  defaultMessage: 'Use this for generated or low-value files that should stay out of the index.',
+                })}
+              </p>
+            </div>
+          </div>
+
+          <div className="grid gap-3 rounded-md border border-border/60 bg-muted/30 p-3 md:grid-cols-2">
+            <div>
+              <p className="text-xs font-medium text-foreground">
+                {formatMessage({
+                  id: 'codexlens.advanced.defaultIgnorePatterns',
+                  defaultMessage: 'Default directory filters',
+                })}
+              </p>
+              <div className="mt-2 flex flex-wrap gap-2">
+                {defaultIgnorePatterns.slice(0, 6).map((pattern) => (
+                  <Badge key={pattern} variant="secondary" className="font-mono text-xs">
+                    {pattern}
+                  </Badge>
+                ))}
+                {defaultIgnorePatterns.length > 6 && (
+                  <Badge variant="outline" className="text-xs">
+                    +{defaultIgnorePatterns.length - 6}
+                  </Badge>
+                )}
+              </div>
+            </div>
+
+            <div>
+              <p className="text-xs font-medium text-foreground">
+                {formatMessage({
+                  id: 'codexlens.advanced.defaultExtensionFilters',
+                  defaultMessage: 'Default file filters',
+                })}
+              </p>
+              <div className="mt-2 flex flex-wrap gap-2">
+                {defaultExtensionFilters.slice(0, 6).map((pattern) => (
+                  <Badge key={pattern} variant="secondary" className="font-mono text-xs">
+                    {pattern}
+                  </Badge>
+                ))}
+                {defaultExtensionFilters.length > 6 && (
+                  <Badge variant="outline" className="text-xs">
+                    +{defaultExtensionFilters.length - 6}
+                  </Badge>
+                )}
+              </div>
+            </div>
+          </div>
+
+          <div className="flex flex-wrap items-center gap-2">
+            <Button
+              onClick={handleSaveFilters}
+              disabled={isLoadingFilters || isUpdatingPatterns || !hasFilterChanges}
+            >
+              <Save className={cn('w-4 h-4 mr-2', isUpdatingPatterns && 'animate-spin')} />
+              {isUpdatingPatterns
+                ? formatMessage({ id: 'codexlens.advanced.saving', defaultMessage: 'Saving...' })
+                : formatMessage({
+                  id: 'codexlens.advanced.saveFilters',
+                  defaultMessage: 'Save filters',
+                })
+              }
+            </Button>
+            <Button
+              variant="outline"
+              onClick={handleResetFilters}
+              disabled={isLoadingFilters || !hasFilterChanges}
+            >
+              <RefreshCw className="w-4 h-4 mr-2" />
+              {formatMessage({ id: 'codexlens.advanced.reset', defaultMessage: 'Reset' })}
+            </Button>
+            <Button
+              variant="outline"
+              onClick={handleRestoreDefaultFilters}
+              disabled={isLoadingFilters || isUpdatingPatterns}
+            >
+              {formatMessage({
+                id: 'codexlens.advanced.restoreDefaults',
+                defaultMessage: 'Restore defaults',
+              })}
+            </Button>
+          </div>
+        </div>
+      </Card>
+
       {/* Environment Variables Editor */}
       <Card className="p-6">
         <div className="flex items-center justify-between mb-4">

ccw/frontend/src/components/mcp/McpServerDialog.tsx

@@ -212,7 +212,7 @@ export function McpServerDialog({
   const { formatMessage } = useIntl();
   const queryClient = useQueryClient();
   const projectPath = useWorkflowStore(selectProjectPath);
-  const { error: showError } = useNotifications();
+  const { error: showError, success: showSuccess } = useNotifications();
 
   // Fetch templates from backend
   const { templates, isLoading: templatesLoading } = useMcpTemplates();
@@ -241,6 +241,10 @@ export function McpServerDialog({
   const [saveAsTemplate, setSaveAsTemplate] = useState(false);
   const projectConfigType: McpProjectConfigType = configType === 'claude-json' ? 'claude' : 'mcp';
 
+  // JSON import mode state
+  const [inputMode, setInputMode] = useState<'form' | 'json'>('form');
+  const [jsonInput, setJsonInput] = useState('');
+
   // Helper to detect transport type from server data
   const detectTransportType = useCallback((serverData: McpServer | undefined): McpTransportType => {
     if (!serverData) return 'stdio';
@@ -249,6 +253,73 @@ export function McpServerDialog({
     return 'stdio';
   }, []);
 
+  // Parse JSON config and populate form
+  const parseJsonConfig = useCallback(() => {
+    try {
+      const config = JSON.parse(jsonInput);
+      
+      // Detect transport type based on config structure
+      if (config.url) {
+        // HTTP transport
+        setTransportType('http');
+        
+        // Parse headers
+        const headers: HttpHeader[] = [];
+        if (config.headers && typeof config.headers === 'object') {
+          Object.entries(config.headers).forEach(([name, value], idx) => {
+            headers.push({
+              id: `header-${Date.now()}-${idx}`,
+              name,
+              value: String(value),
+              isEnvVar: false,
+            });
+          });
+        }
+        
+        setFormData(prev => ({
+          ...prev,
+          url: config.url || '',
+          headers,
+          bearerTokenEnvVar: config.bearer_token_env_var || config.bearerTokenEnvVar || '',
+        }));
+      } else {
+        // STDIO transport
+        setTransportType('stdio');
+        
+        const args = Array.isArray(config.args) ? config.args : [];
+        const env = config.env && typeof config.env === 'object' ? config.env : {};
+        
+        setFormData(prev => ({
+          ...prev,
+          command: config.command || '',
+          args,
+          env,
+        }));
+        
+        setArgsInput(args.join(', '));
+        setEnvInput(
+          Object.entries(env)
+            .map(([k, v]) => `${k}=${v}`)
+            .join('\n')
+        );
+      }
+      
+      // Switch to form mode to show parsed data
+      setInputMode('form');
+      setErrors({});
+      showSuccess(
+        formatMessage({ id: 'mcp.dialog.json.parseSuccess' }),
+        formatMessage({ id: 'mcp.dialog.json.parseSuccessDesc' })
+      );
+    } catch (error) {
+      setErrors({ 
+        name: formatMessage({ id: 'mcp.dialog.json.parseError' }, { 
+          error: error instanceof Error ? error.message : 'Invalid JSON' 
+        })
+      });
+    }
+  }, [jsonInput, formatMessage, showSuccess]);
+
   // Initialize form from server prop (edit mode)
   useEffect(() => {
     if (server && mode === 'edit') {
@@ -578,7 +649,94 @@ export function McpServerDialog({
           </DialogTitle>
         </DialogHeader>
 
+        {/* Input Mode Switcher - Only in add mode */}
+        {mode === 'add' && (
+          <div className="flex gap-2 border-b pb-3">
+            <Button
+              type="button"
+              variant={inputMode === 'form' ? 'default' : 'outline'}
+              size="sm"
+              onClick={() => setInputMode('form')}
+              className="flex-1"
+            >
+              {formatMessage({ id: 'mcp.dialog.mode.form' })}
+            </Button>
+            <Button
+              type="button"
+              variant={inputMode === 'json' ? 'default' : 'outline'}
+              size="sm"
+              onClick={() => setInputMode('json')}
+              className="flex-1"
+            >
+              {formatMessage({ id: 'mcp.dialog.mode.json' })}
+            </Button>
+          </div>
+        )}
+
         <div className="space-y-4">
+          {/* JSON Input Mode */}
+          {inputMode === 'json' ? (
+            <div className="space-y-4">
+              <div className="space-y-2">
+                <label className="text-sm font-medium text-foreground">
+                  {formatMessage({ id: 'mcp.dialog.json.label' })}
+                </label>
+                <textarea
+                  value={jsonInput}
+                  onChange={(e) => setJsonInput(e.target.value)}
+                  placeholder={formatMessage({ id: 'mcp.dialog.json.placeholder' })}
+                  className={cn(
+                    'flex min-h-[300px] w-full rounded-md border border-input bg-background px-3 py-2 text-sm ring-offset-background placeholder:text-muted-foreground focus-visible:outline-none focus-visible:ring-2 focus-visible:ring-ring focus-visible:ring-offset-2 disabled:cursor-not-allowed disabled:opacity-50 font-mono',
+                    errors.name && 'border-destructive focus-visible:ring-destructive'
+                  )}
+                />
+                {errors.name && (
+                  <p className="text-sm text-destructive">{errors.name}</p>
+                )}
+                <p className="text-xs text-muted-foreground">
+                  {formatMessage({ id: 'mcp.dialog.json.hint' })}
+                </p>
+              </div>
+
+              {/* Example JSON */}
+              <div className="space-y-2">
+                <label className="text-sm font-medium text-foreground">
+                  {formatMessage({ id: 'mcp.dialog.json.example' })}
+                </label>
+                <div className="bg-muted p-3 rounded-md">
+                  <p className="text-xs font-medium mb-2">STDIO:</p>
+                  <pre className="text-xs overflow-x-auto">
+{`{
+  "command": "npx",
+  "args": ["-y", "@modelcontextprotocol/server-filesystem", "/path"],
+  "env": {
+    "API_KEY": "your-key"
+  }
+}`}
+                  </pre>
+                  <p className="text-xs font-medium mt-3 mb-2">HTTP:</p>
+                  <pre className="text-xs overflow-x-auto">
+{`{
+  "url": "http://localhost:3000",
+  "headers": {
+    "Authorization": "Bearer token"
+  }
+}`}
+                  </pre>
+                </div>
+              </div>
+
+              <Button
+                type="button"
+                onClick={parseJsonConfig}
+                disabled={!jsonInput.trim()}
+                className="w-full"
+              >
+                {formatMessage({ id: 'mcp.dialog.json.parse' })}
+              </Button>
+            </div>
+          ) : (
+            <>
               {/* Template Selector - Only for STDIO */}
               {transportType === 'stdio' && (
             <div className="space-y-2">
@@ -901,6 +1059,8 @@ export function McpServerDialog({
               </label>
             </div>
           )}
+          </>
+        )}
         </div>
 
         <DialogFooter>

ccw/frontend/src/lib/api.mcp.test.ts

@@ -1,4 +1,4 @@
-import { describe, expect, it, vi } from 'vitest';
+import { afterEach, beforeEach, describe, expect, it, vi } from 'vitest';
 import {
   fetchMcpServers,
   toggleMcpServer,
@@ -26,7 +26,29 @@ function getLastFetchCall(fetchMock: any) {
   return calls[calls.length - 1] as [RequestInfo | URL, RequestInit | undefined];
 }
 
+const TEST_CSRF_TOKEN = 'test-csrf-token';
+
+function mockFetchWithCsrf(
+  handler: (input: RequestInfo | URL, init?: RequestInit) => Response | Promise<Response>
+) {
+  return vi.spyOn(globalThis, 'fetch').mockImplementation(async (input, init) => {
+    if (input === '/api/csrf-token') {
+      return jsonResponse({ csrfToken: TEST_CSRF_TOKEN });
+    }
+
+    return handler(input, init);
+  });
+}
+
 describe('MCP API (frontend ↔ backend contract)', () => {
+  beforeEach(() => {
+    vi.restoreAllMocks();
+    vi.spyOn(console, 'warn').mockImplementation(() => {});
+  });
+
+  afterEach(() => {
+    vi.restoreAllMocks();
+  });
   it('fetchMcpServers derives lists from /api/mcp-config and computes enabled from disabledMcpServers', async () => {
     const fetchMock = vi.spyOn(globalThis, 'fetch').mockResolvedValue(
       jsonResponse({
@@ -58,7 +80,8 @@ describe('MCP API (frontend ↔ backend contract)', () => {
     expect(fetchMock.mock.calls[0]?.[0]).toBe('/api/mcp-config');
 
     expect(result.global.map((s) => s.name).sort()).toEqual(['global1', 'globalDup']);
-    expect(result.project.map((s) => s.name)).toEqual(['projOnly']);
+    expect(result.project.map((s) => s.name)).toEqual(['projOnly', 'globalDup', 'entDup']);
+    expect(result.conflicts.map((c) => c.name)).toEqual(['globalDup']);
 
     const global1 = result.global.find((s) => s.name === 'global1');
     expect(global1?.enabled).toBe(false);
@@ -76,9 +99,7 @@ describe('MCP API (frontend ↔ backend contract)', () => {
   });
 
   it('toggleMcpServer uses /api/mcp-toggle with { projectPath, serverName, enable }', async () => {
-    const fetchMock = vi
+    const fetchMock = mockFetchWithCsrf(async (input, _init) => {
-      .spyOn(globalThis, 'fetch')
-      .mockImplementation(async (input, _init) => {
         if (input === '/api/mcp-toggle') {
           return jsonResponse({ success: true, serverName: 'global1', enabled: false });
         }
@@ -111,7 +132,7 @@ describe('MCP API (frontend ↔ backend contract)', () => {
   });
 
   it('deleteMcpServer calls the correct backend endpoint for project/global scopes', async () => {
-    const fetchMock = vi.spyOn(globalThis, 'fetch').mockImplementation(async (input) => {
+    const fetchMock = mockFetchWithCsrf(async (input) => {
       if (input === '/api/mcp-remove-global-server') {
         return jsonResponse({ success: true });
       }
@@ -129,9 +150,7 @@ describe('MCP API (frontend ↔ backend contract)', () => {
   });
 
   it('createMcpServer (project) uses /api/mcp-copy-server and includes serverName + serverConfig', async () => {
-    const fetchMock = vi
+    const fetchMock = mockFetchWithCsrf(async (input) => {
-      .spyOn(globalThis, 'fetch')
-      .mockImplementation(async (input) => {
         if (input === '/api/mcp-copy-server') {
           return jsonResponse({ success: true });
         }
@@ -181,7 +200,7 @@ describe('MCP API (frontend ↔ backend contract)', () => {
   });
 
   it('updateMcpServer (global) upserts via /api/mcp-add-global-server', async () => {
-    const fetchMock = vi.spyOn(globalThis, 'fetch').mockImplementation(async (input) => {
+    const fetchMock = mockFetchWithCsrf(async (input) => {
       if (input === '/api/mcp-add-global-server') {
         return jsonResponse({ success: true });
       }
@@ -232,7 +251,7 @@ describe('MCP API (frontend ↔ backend contract)', () => {
   });
 
   it('crossCliCopy codex->claude copies via /api/mcp-copy-server per server', async () => {
-    const fetchMock = vi.spyOn(globalThis, 'fetch').mockImplementation(async (input) => {
+    const fetchMock = mockFetchWithCsrf(async (input) => {
       if (input === '/api/codex-mcp-config') {
         return jsonResponse({ servers: { s1: { command: 'node' } }, configPath: 'x', exists: true });
       }

ccw/frontend/src/locales/en/mcp-manager.json

@@ -115,6 +115,20 @@
         "addHeader": "Add Header"
       }
     },
+    "mode": {
+      "form": "Form Mode",
+      "json": "JSON Mode"
+    },
+    "json": {
+      "label": "JSON Configuration",
+      "placeholder": "Paste MCP server JSON configuration...",
+      "hint": "Paste complete MCP server configuration JSON, then click Parse button",
+      "example": "Example Format",
+      "parse": "Parse JSON",
+      "parseSuccess": "JSON Parsed Successfully",
+      "parseSuccessDesc": "Configuration has been populated to the form, please review and save",
+      "parseError": "JSON Parse Error: {error}"
+    },
     "templates": {
       "npx-stdio": "NPX STDIO",
       "python-stdio": "Python STDIO",

ccw/frontend/src/locales/zh/mcp-manager.json

@@ -104,6 +104,20 @@
         "addHeader": "添加请求头"
       }
     },
+    "mode": {
+      "form": "表单模式",
+      "json": "JSON 模式"
+    },
+    "json": {
+      "label": "JSON 配置",
+      "placeholder": "粘贴 MCP 服务器 JSON 配置...",
+      "hint": "粘贴完整的 MCP 服务器配置 JSON，然后点击解析按钮",
+      "example": "示例格式",
+      "parse": "解析 JSON",
+      "parseSuccess": "JSON 解析成功",
+      "parseSuccessDesc": "配置已填充到表单中，请检查并保存",
+      "parseError": "JSON 解析失败：{error}"
+    },
     "templates": {
       "npx-stdio": "NPX STDIO",
       "python-stdio": "Python STDIO",

ccw/tests/integration/codexlens-ignore-pattern-routes.test.ts

@@ -0,0 +1,144 @@
+/**
+ * Integration tests for CodexLens ignore-pattern configuration routes.
+ *
+ * Notes:
+ * - Targets runtime implementation shipped in `ccw/dist`.
+ * - Calls route handler directly (no HTTP server required).
+ * - Uses temporary CODEXLENS_DATA_DIR to isolate ~/.codexlens writes.
+ */
+
+import { after, before, describe, it, mock } from 'node:test';
+import assert from 'node:assert/strict';
+import { existsSync, mkdtempSync, readFileSync, rmSync } from 'node:fs';
+import { tmpdir } from 'node:os';
+import { join } from 'node:path';
+
+const CODEXLENS_HOME = mkdtempSync(join(tmpdir(), 'codexlens-ignore-home-'));
+const PROJECT_ROOT = mkdtempSync(join(tmpdir(), 'codexlens-ignore-project-'));
+
+const configRoutesUrl = new URL('../../dist/core/routes/codexlens/config-handlers.js', import.meta.url);
+configRoutesUrl.searchParams.set('t', String(Date.now()));
+
+// eslint-disable-next-line @typescript-eslint/no-explicit-any
+let mod: any;
+
+const originalEnv = {
+  CODEXLENS_DATA_DIR: process.env.CODEXLENS_DATA_DIR,
+};
+
+async function callConfigRoute(
+  initialPath: string,
+  method: string,
+  path: string,
+  body?: unknown,
+): Promise<{ handled: boolean; status: number; json: any }> {
+  const url = new URL(path, 'http://localhost');
+  let status = 0;
+  let text = '';
+  let postPromise: Promise<void> | null = null;
+
+  const res = {
+    writeHead(code: number) {
+      status = code;
+    },
+    end(chunk?: unknown) {
+      text = chunk === undefined ? '' : String(chunk);
+    },
+  };
+
+  const handlePostRequest = (_req: unknown, _res: unknown, handler: (parsed: any) => Promise<any>) => {
+    postPromise = (async () => {
+      const result = await handler(body ?? {});
+      const errorValue = result && typeof result === 'object' ? result.error : undefined;
+      const statusValue = result && typeof result === 'object' ? result.status : undefined;
+
+      if (typeof errorValue === 'string' && errorValue.length > 0) {
+        res.writeHead(typeof statusValue === 'number' ? statusValue : 500);
+        res.end(JSON.stringify({ error: errorValue }));
+        return;
+      }
+
+      res.writeHead(200);
+      res.end(JSON.stringify(result));
+    })();
+  };
+
+  const handled = await mod.handleCodexLensConfigRoutes({
+    pathname: url.pathname,
+    url,
+    req: { method },
+    res,
+    initialPath,
+    handlePostRequest,
+    broadcastToClients() {},
+  });
+
+  if (postPromise) {
+    await postPromise;
+  }
+
+  return { handled, status, json: text ? JSON.parse(text) : null };
+}
+
+describe('codexlens ignore-pattern routes integration', async () => {
+  before(async () => {
+    process.env.CODEXLENS_DATA_DIR = CODEXLENS_HOME;
+    mock.method(console, 'log', () => {});
+    mock.method(console, 'warn', () => {});
+    mock.method(console, 'error', () => {});
+    mod = await import(configRoutesUrl.href);
+  });
+
+  after(() => {
+    mock.restoreAll();
+    process.env.CODEXLENS_DATA_DIR = originalEnv.CODEXLENS_DATA_DIR;
+    rmSync(CODEXLENS_HOME, { recursive: true, force: true });
+    rmSync(PROJECT_ROOT, { recursive: true, force: true });
+  });
+
+  it('GET /api/codexlens/ignore-patterns returns defaults before config exists', async () => {
+    const res = await callConfigRoute(PROJECT_ROOT, 'GET', '/api/codexlens/ignore-patterns');
+
+    assert.equal(res.handled, true);
+    assert.equal(res.status, 200);
+    assert.equal(res.json.success, true);
+    assert.equal(Array.isArray(res.json.patterns), true);
+    assert.equal(Array.isArray(res.json.extensionFilters), true);
+    assert.ok(res.json.patterns.includes('dist'));
+    assert.ok(res.json.extensionFilters.includes('*.min.js'));
+  });
+
+  it('POST /api/codexlens/ignore-patterns persists custom patterns and filters', async () => {
+    const saveRes = await callConfigRoute(PROJECT_ROOT, 'POST', '/api/codexlens/ignore-patterns', {
+      patterns: ['dist', 'frontend/dist'],
+      extensionFilters: ['*.min.js', 'frontend/skip.ts'],
+    });
+
+    assert.equal(saveRes.handled, true);
+    assert.equal(saveRes.status, 200);
+    assert.equal(saveRes.json.success, true);
+    assert.deepEqual(saveRes.json.patterns, ['dist', 'frontend/dist']);
+    assert.deepEqual(saveRes.json.extensionFilters, ['*.min.js', 'frontend/skip.ts']);
+
+    const settingsPath = join(CODEXLENS_HOME, 'settings.json');
+    assert.equal(existsSync(settingsPath), true);
+    const savedSettings = JSON.parse(readFileSync(settingsPath, 'utf8'));
+    assert.deepEqual(savedSettings.ignore_patterns, ['dist', 'frontend/dist']);
+    assert.deepEqual(savedSettings.extension_filters, ['*.min.js', 'frontend/skip.ts']);
+
+    const getRes = await callConfigRoute(PROJECT_ROOT, 'GET', '/api/codexlens/ignore-patterns');
+    assert.equal(getRes.status, 200);
+    assert.deepEqual(getRes.json.patterns, ['dist', 'frontend/dist']);
+    assert.deepEqual(getRes.json.extensionFilters, ['*.min.js', 'frontend/skip.ts']);
+  });
+
+  it('POST /api/codexlens/ignore-patterns rejects invalid entries', async () => {
+    const res = await callConfigRoute(PROJECT_ROOT, 'POST', '/api/codexlens/ignore-patterns', {
+      patterns: ['bad pattern!'],
+    });
+
+    assert.equal(res.handled, true);
+    assert.equal(res.status, 400);
+    assert.match(String(res.json.error), /Invalid patterns:/);
+  });
+});

ccw/undefined/settings.json

@@ -0,0 +1,10 @@
+{
+  "ignore_patterns": [
+    "dist",
+    "frontend/dist"
+  ],
+  "extension_filters": [
+    "*.min.js",
+    "frontend/skip.ts"
+  ]
+}

codex-lens/.pytest-temp/test_builder_loads_saved_ignor0/codexlens-home/settings.json

@@ -0,0 +1 @@
+{"ignore_patterns": ["frontend/dist"], "extension_filters": ["*.min.js"]}

codex-lens/.pytest-temp/test_builder_loads_saved_ignor0/frontend/app.ts

@@ -0,0 +1 @@
+export const app = 1

codex-lens/.pytest-temp/test_builder_loads_saved_ignor0/frontend/bundle.min.js

@@ -0,0 +1 @@
+export const bundle = 1

codex-lens/.pytest-temp/test_builder_loads_saved_ignor0/frontend/dist/compiled.ts

@@ -0,0 +1 @@
+export const compiled = 1

codex-lens/.pytest-temp/test_collect_dirs_by_depth_res0/frontend/dist/bundle.ts

@@ -0,0 +1 @@
+export const bundle = 1

codex-lens/.pytest-temp/test_collect_dirs_by_depth_res0/frontend/src/app.ts

@@ -0,0 +1 @@
+export const app = 1

codex-lens/.pytest-temp/test_collect_dirs_by_depth_ski0/.next/generated.py

@@ -0,0 +1 @@
+print('artifact')

codex-lens/.pytest-temp/test_collect_dirs_by_depth_ski0/.parcel-cache/generated.py

@@ -0,0 +1 @@
+print('artifact')

codex-lens/.pytest-temp/test_collect_dirs_by_depth_ski0/.turbo/generated.py

@@ -0,0 +1 @@
+print('artifact')

codex-lens/.pytest-temp/test_collect_dirs_by_depth_ski0/build/generated.py

@@ -0,0 +1 @@
+print('artifact')

codex-lens/.pytest-temp/test_collect_dirs_by_depth_ski0/coverage/generated.py

@@ -0,0 +1 @@
+print('artifact')

codex-lens/.pytest-temp/test_collect_dirs_by_depth_ski0/dist/generated.py

@@ -0,0 +1 @@
+print('artifact')

codex-lens/.pytest-temp/test_collect_dirs_by_depth_ski0/out/generated.py

@@ -0,0 +1 @@
+print('artifact')

codex-lens/.pytest-temp/test_collect_dirs_by_depth_ski0/src/app.py

@@ -0,0 +1 @@
+print('ok')

codex-lens/.pytest-temp/test_collect_dirs_by_depth_ski0/target/generated.py

@@ -0,0 +1 @@
+print('artifact')

codex-lens/.pytest-temp/test_iter_source_files_respect0/frontend/app.ts

@@ -0,0 +1 @@
+export const app = 1

codex-lens/.pytest-temp/test_iter_source_files_respect0/frontend/bundle.min.js

@@ -0,0 +1 @@
+export const bundle = 1

codex-lens/.pytest-temp/test_iter_source_files_respect0/frontend/skip.ts

@@ -0,0 +1 @@
+export const skip = 1

codex-lens/.pytest-temp/test_load_settings_reads_ignor0/settings.json

@@ -0,0 +1 @@
+{"ignore_patterns": ["frontend/dist", "coverage"], "extension_filters": ["*.min.js", "*.map"]}

codex-lens/.pytest-temp/test_should_index_dir_ignores_0/package/dist/bundle.py

@@ -0,0 +1 @@
+print('compiled')

codex-lens/src/codexlens/storage/index_tree.py

@@ -123,11 +123,12 @@ class IndexTreeBuilder:
         """
         self.registry = registry
         self.mapper = mapper
-        self.config = config or Config()
+        self.config = config or Config.load()
         self.parser_factory = ParserFactory(self.config)
         self.logger = logging.getLogger(__name__)
         self.incremental = incremental
         self.ignore_patterns = self._resolve_ignore_patterns()
+        self.extension_filters = self._resolve_extension_filters()
 
     def _resolve_ignore_patterns(self) -> Tuple[str, ...]:
         configured_patterns = getattr(self.config, "ignore_patterns", None)
@@ -139,6 +140,18 @@ class IndexTreeBuilder:
                 cleaned.append(pattern)
         return tuple(dict.fromkeys(cleaned))
 
+    def _resolve_extension_filters(self) -> Tuple[str, ...]:
+        configured_filters = getattr(self.config, "extension_filters", None)
+        if not configured_filters:
+            return tuple()
+
+        cleaned: List[str] = []
+        for item in configured_filters:
+            pattern = str(item).strip().replace('\\', '/').rstrip('/')
+            if pattern:
+                cleaned.append(pattern)
+        return tuple(dict.fromkeys(cleaned))
+
     def _is_ignored_dir(self, dir_path: Path, source_root: Optional[Path] = None) -> bool:
         name = dir_path.name
         if name.startswith('.'):
@@ -159,6 +172,25 @@ class IndexTreeBuilder:
 
         return False
 
+    def _is_filtered_file(self, file_path: Path, source_root: Optional[Path] = None) -> bool:
+        if not self.extension_filters:
+            return False
+
+        rel_path: Optional[str] = None
+        if source_root is not None:
+            try:
+                rel_path = file_path.relative_to(source_root).as_posix()
+            except ValueError:
+                rel_path = None
+
+        for pattern in self.extension_filters:
+            if pattern == file_path.name or fnmatch.fnmatch(file_path.name, pattern):
+                return True
+            if rel_path and (pattern == rel_path or fnmatch.fnmatch(rel_path, pattern)):
+                return True
+
+        return False
+
     def build(
         self,
         source_root: Path,
@@ -259,6 +291,7 @@ class IndexTreeBuilder:
                 dirs,
                 languages,
                 workers,
+                source_root=source_root,
                 project_id=project_info.id,
                 global_index_db_path=global_index_db_path,
             )
@@ -410,6 +443,7 @@ class IndexTreeBuilder:
         return self._build_single_dir(
             source_path,
             languages=None,
+            source_root=project_root,
             project_id=project_info.id,
             global_index_db_path=global_index_db_path,
         )
@@ -491,7 +525,7 @@ class IndexTreeBuilder:
             return False
 
         # Check for supported files in this directory
-        source_files = self._iter_source_files(dir_path, languages)
+        source_files = self._iter_source_files(dir_path, languages, source_root=source_root)
         if len(source_files) > 0:
             return True
 
@@ -519,7 +553,7 @@ class IndexTreeBuilder:
             True if directory tree contains indexable files
         """
         # Check for supported files in this directory
-        source_files = self._iter_source_files(dir_path, languages)
+        source_files = self._iter_source_files(dir_path, languages, source_root=source_root)
         if len(source_files) > 0:
             return True
 
@@ -543,6 +577,7 @@ class IndexTreeBuilder:
         languages: List[str],
         workers: int,
         *,
+        source_root: Path,
         project_id: int,
         global_index_db_path: Path,
     ) -> List[DirBuildResult]:
@@ -570,6 +605,7 @@ class IndexTreeBuilder:
             result = self._build_single_dir(
                 dirs[0],
                 languages,
+                source_root=source_root,
                 project_id=project_id,
                 global_index_db_path=global_index_db_path,
             )
@@ -585,6 +621,7 @@ class IndexTreeBuilder:
             "static_graph_relationship_types": self.config.static_graph_relationship_types,
             "use_astgrep": getattr(self.config, "use_astgrep", False),
             "ignore_patterns": list(getattr(self.config, "ignore_patterns", [])),
+            "extension_filters": list(getattr(self.config, "extension_filters", [])),
         }
 
         worker_args = [
@@ -595,6 +632,7 @@ class IndexTreeBuilder:
                 config_dict,
                 int(project_id),
                 str(global_index_db_path),
+                str(source_root),
             )
             for dir_path in dirs
         ]
@@ -631,6 +669,7 @@ class IndexTreeBuilder:
         dir_path: Path,
         languages: List[str] = None,
         *,
+        source_root: Path,
         project_id: int,
         global_index_db_path: Path,
     ) -> DirBuildResult:
@@ -663,7 +702,7 @@ class IndexTreeBuilder:
             store.initialize()
 
             # Get source files in this directory only
-            source_files = self._iter_source_files(dir_path, languages)
+            source_files = self._iter_source_files(dir_path, languages, source_root=source_root)
 
             files_count = 0
             symbols_count = 0
@@ -731,7 +770,7 @@ class IndexTreeBuilder:
                 d.name
                 for d in dir_path.iterdir()
                 if d.is_dir()
-                and not self._is_ignored_dir(d)
+                and not self._is_ignored_dir(d, source_root=source_root)
             ]
 
             store.update_merkle_root()
@@ -826,7 +865,7 @@ class IndexTreeBuilder:
             )
 
     def _iter_source_files(
-        self, dir_path: Path, languages: List[str] = None
+        self, dir_path: Path, languages: List[str] = None, source_root: Optional[Path] = None
     ) -> List[Path]:
         """Iterate source files in directory (non-recursive).
 
@@ -852,6 +891,9 @@ class IndexTreeBuilder:
             if item.name.startswith("."):
                 continue
 
+            if self._is_filtered_file(item, source_root=source_root):
+                continue
+
             # Check language support
             language_id = self.config.language_for_path(item)
             if not language_id:
@@ -1027,19 +1069,37 @@ def _compute_graph_neighbors(
 # === Worker Function for ProcessPoolExecutor ===
 
 
-def _matches_ignore_patterns(path: Path, patterns: List[str]) -> bool:
+def _matches_path_patterns(path: Path, patterns: List[str], source_root: Optional[Path] = None) -> bool:
-    name = path.name
+    rel_path: Optional[str] = None
-    if name.startswith('.'):
+    if source_root is not None:
-        return True
+        try:
+            rel_path = path.relative_to(source_root).as_posix()
+        except ValueError:
+            rel_path = None
+
     for pattern in patterns:
         normalized = str(pattern).strip().replace('\\', '/').rstrip('/')
         if not normalized:
             continue
-        if normalized == name or fnmatch.fnmatch(name, normalized):
+        if normalized == path.name or fnmatch.fnmatch(path.name, normalized):
+            return True
+        if rel_path and (normalized == rel_path or fnmatch.fnmatch(rel_path, normalized)):
             return True
     return False
 
 
+def _matches_ignore_patterns(path: Path, patterns: List[str], source_root: Optional[Path] = None) -> bool:
+    if path.name.startswith('.'):
+        return True
+    return _matches_path_patterns(path, patterns, source_root)
+
+
+def _matches_extension_filters(path: Path, patterns: List[str], source_root: Optional[Path] = None) -> bool:
+    if not patterns:
+        return False
+    return _matches_path_patterns(path, patterns, source_root)
+
+
 def _build_dir_worker(args: tuple) -> DirBuildResult:
     """Worker function for parallel directory building.
 
@@ -1047,12 +1107,12 @@ def _build_dir_worker(args: tuple) -> DirBuildResult:
     Reconstructs necessary objects from serializable arguments.
 
     Args:
-        args: Tuple of (dir_path, index_db_path, languages, config_dict, project_id, global_index_db_path)
+        args: Tuple of (dir_path, index_db_path, languages, config_dict, project_id, global_index_db_path, source_root)
 
     Returns:
         DirBuildResult for the directory
     """
-    dir_path, index_db_path, languages, config_dict, project_id, global_index_db_path = args
+    dir_path, index_db_path, languages, config_dict, project_id, global_index_db_path, source_root = args
 
     # Reconstruct config
     config = Config(
@@ -1064,9 +1124,11 @@ def _build_dir_worker(args: tuple) -> DirBuildResult:
         static_graph_relationship_types=list(config_dict.get("static_graph_relationship_types", ["imports", "inherits"])),
         use_astgrep=bool(config_dict.get("use_astgrep", False)),
         ignore_patterns=list(config_dict.get("ignore_patterns", [])),
+        extension_filters=list(config_dict.get("extension_filters", [])),
     )
 
     parser_factory = ParserFactory(config)
+    source_root_path = Path(source_root) if source_root else None
 
     global_index: GlobalSymbolIndex | None = None
     try:
@@ -1092,6 +1154,9 @@ def _build_dir_worker(args: tuple) -> DirBuildResult:
             if item.name.startswith("."):
                 continue
 
+            if _matches_extension_filters(item, config.extension_filters, source_root_path):
+                continue
+
             language_id = config.language_for_path(item)
             if not language_id:
                 continue
@@ -1146,7 +1211,7 @@ def _build_dir_worker(args: tuple) -> DirBuildResult:
         subdirs = [
             d.name
             for d in dir_path.iterdir()
-            if d.is_dir() and not _matches_ignore_patterns(d, ignore_patterns)
+            if d.is_dir() and not _matches_ignore_patterns(d, ignore_patterns, source_root_path)
         ]
 
         store.update_merkle_root()

codex-lens/tests/test_config_ignore_patterns.py

@@ -19,6 +19,7 @@ def test_load_settings_reads_ignore_patterns_and_extension_filters(tmp_path: Pat
     )
 
     config = Config(data_dir=tmp_path)
+    config.load_settings()
 
     assert config.ignore_patterns == ["frontend/dist", "coverage"]
     assert config.extension_filters == ["*.min.js", "*.map"]

codex-lens/tests/test_index_tree_ignore_dirs.py

@@ -1,5 +1,6 @@
 from __future__ import annotations
 
+import json
 from pathlib import Path
 from unittest.mock import MagicMock
 
@@ -84,3 +85,63 @@ def test_collect_dirs_by_depth_respects_relative_ignore_patterns_from_config(tmp
 
     assert "frontend/src" in discovered_dirs
     assert "frontend/dist" not in discovered_dirs
+
+
+def test_iter_source_files_respects_extension_filters_and_relative_patterns(tmp_path: Path) -> None:
+    frontend_dir = tmp_path / "frontend"
+    frontend_dir.mkdir()
+    (frontend_dir / "app.ts").write_text("export const app = 1\n", encoding="utf-8")
+    (frontend_dir / "bundle.min.js").write_text("export const bundle = 1\n", encoding="utf-8")
+    (frontend_dir / "skip.ts").write_text("export const skip = 1\n", encoding="utf-8")
+
+    builder = IndexTreeBuilder(
+        registry=MagicMock(),
+        mapper=MagicMock(),
+        config=Config(
+            data_dir=tmp_path / "data",
+            extension_filters=["*.min.js", "frontend/skip.ts"],
+        ),
+        incremental=False,
+    )
+
+    source_files = builder._iter_source_files(frontend_dir, source_root=tmp_path)
+
+    assert [path.name for path in source_files] == ["app.ts"]
+    assert builder._should_index_dir(frontend_dir, source_root=tmp_path) is True
+
+
+def test_builder_loads_saved_ignore_and_extension_filters_by_default(tmp_path: Path, monkeypatch) -> None:
+    codexlens_home = tmp_path / "codexlens-home"
+    codexlens_home.mkdir()
+    (codexlens_home / "settings.json").write_text(
+        json.dumps(
+            {
+                "ignore_patterns": ["frontend/dist"],
+                "extension_filters": ["*.min.js"],
+            }
+        ),
+        encoding="utf-8",
+    )
+    monkeypatch.setenv("CODEXLENS_DATA_DIR", str(codexlens_home))
+
+    frontend_dir = tmp_path / "frontend"
+    frontend_dir.mkdir()
+    dist_dir = frontend_dir / "dist"
+    dist_dir.mkdir()
+    (frontend_dir / "app.ts").write_text("export const app = 1\n", encoding="utf-8")
+    (frontend_dir / "bundle.min.js").write_text("export const bundle = 1\n", encoding="utf-8")
+    (dist_dir / "compiled.ts").write_text("export const compiled = 1\n", encoding="utf-8")
+
+    builder = IndexTreeBuilder(
+        registry=MagicMock(),
+        mapper=MagicMock(),
+        config=None,
+        incremental=False,
+    )
+
+    source_files = builder._iter_source_files(frontend_dir, source_root=tmp_path)
+    dirs_by_depth = builder._collect_dirs_by_depth(tmp_path)
+    discovered_dirs = _relative_dirs(tmp_path, dirs_by_depth)
+
+    assert [path.name for path in source_files] == ["app.ts"]
+    assert "frontend/dist" not in discovered_dirs

docs/branding/naming-system.md

@@ -0,0 +1,415 @@
+# Maestro 品牌命名系统
+
+> **文档版本**: 1.0.0
+> **最后更新**: 2026-03-09
+> **状态**: 已确定
+
+## 概述
+
+本文档定义了 Maestro 项目的完整品牌命名系统，包括总品牌、子品牌（工作流）、包名、CLI 命令、域名等命名规范。
+
+### 品牌理念
+
+**Maestro**（指挥家/编排大师）是一个智能编排平台，协调多个 AI CLI 工具，为开发者提供统一的工作流体验。
+
+---
+
+## 品牌架构
+
+```
+Maestro (总平台/编排系统)
+├── Maestro Claude (基于 Claude Code 的工作流)
+├── Maestro Codex (基于 Codex 的工作流)
+├── Maestro Gemini (基于 Gemini 的工作流)
+└── Maestro Qwen (基于 Qwen 的工作流)
+```
+
+### 设计原则
+
+1. **清晰直观** - 工作流名称直接表明使用的 CLI 工具
+2. **品牌统一** - 所有工作流都在 Maestro 品牌下
+3. **易于扩展** - 未来添加新 CLI 时，命名规则保持一致
+4. **技术透明** - 开发者清楚底层技术栈
+
+---
+
+## 完整命名规范
+
+| 工作流 | 品牌名 | NPM 包 | CLI 命令 | GitHub Repo | 域名 |
+|--------|--------|---------|----------|-------------|------|
+| Claude Code 工作流 | **Maestro Claude** | `@maestro/claude` | `maestro claude` | `maestro-claude` | `claude.maestro.dev` |
+| Codex 工作流 | **Maestro Codex** | `@maestro/codex` | `maestro codex` | `maestro-codex` | `codex.maestro.dev` |
+| Gemini 工作流 | **Maestro Gemini** | `@maestro/gemini` | `maestro gemini` | `maestro-gemini` | `gemini.maestro.dev` |
+| Qwen 工作流 | **Maestro Qwen** | `@maestro/qwen` | `maestro qwen` | `maestro-qwen` | `qwen.maestro.dev` |
+
+### 命名规则
+
+- **品牌名**: `Maestro <CLI名称>`
+- **NPM 包**: `@maestro/<cli-name>`（小写，使用 scope）
+- **CLI 命令**: `maestro <cli-name>`（小写）
+- **GitHub 仓库**: `maestro-<cli-name>`（小写，连字符）
+- **域名**: `<cli-name>.maestro.dev`（小写，子域名）
+
+---
+
+## 目录结构
+
+### 推荐的项目结构
+
+```
+maestro/
+├── packages/
+│   ├── core/              # Maestro 核心引擎
+│   │   ├── src/
+│   │   └── package.json
+│   ├── claude/            # Maestro Claude 工作流
+│   │   ├── src/
+│   │   └── package.json
+│   ├── codex/             # Maestro Codex 工作流
+│   │   ├── src/
+│   │   └── package.json
+│   ├── gemini/            # Maestro Gemini 工作流
+│   │   ├── src/
+│   │   └── package.json
+│   ├── qwen/              # Maestro Qwen 工作流
+│   │   ├── src/
+│   │   └── package.json
+│   └── podium/            # Maestro UI (原 CCW)
+│       ├── frontend/
+│       ├── backend/
+│       └── package.json
+├── docs/
+│   ├── branding/          # 品牌文档
+│   ├── guides/            # 使用指南
+│   └── api/               # API 文档
+├── .codex/                # Codex 配置和技能
+├── .workflow/             # 工作流配置
+├── package.json           # Monorepo 根配置
+└── README.md
+```
+
+---
+
+## CLI 使用示例
+
+### 基本调用
+
+```bash
+# 使用 Claude Code 工作流
+maestro claude --prompt "implement user authentication"
+
+# 使用 Codex 工作流
+maestro codex --analyze "src/**/*.ts"
+
+# 使用 Gemini 工作流
+maestro gemini --task "summarize this document"
+
+# 使用 Qwen 工作流
+maestro qwen --prompt "explain this code"
+```
+
+### 带参数调用
+
+```bash
+# Claude 工作流 - 代码生成
+maestro claude generate --file "components/Button.tsx" --prompt "add loading state"
+
+# Codex 工作流 - 代码分析
+maestro codex search --pattern "useEffect" --path "src/"
+
+# Gemini 工作流 - 多模态任务
+maestro gemini analyze --image "screenshot.png" --prompt "describe this UI"
+
+# Qwen 工作流 - 快速任务
+maestro qwen translate --from "en" --to "zh" --text "Hello World"
+```
+
+### 工作流选择
+
+```bash
+# 查看可用工作流
+maestro list
+
+# 查看特定工作流信息
+maestro info claude
+
+# 设置默认工作流
+maestro config set default-workflow claude
+```
+
+---
+
+## 配置文件
+
+### maestro.config.json
+
+```json
+{
+  "version": "1.0.0",
+  "workflows": {
+    "claude": {
+      "name": "Maestro Claude",
+      "description": "Claude Code workflow for code generation and refactoring",
+      "cli": "claude-code",
+      "enabled": true,
+      "defaultModel": "claude-sonnet-4",
+      "capabilities": ["generate", "refactor", "explain", "chat"]
+    },
+    "codex": {
+      "name": "Maestro Codex",
+      "description": "Codex workflow for code analysis and understanding",
+      "cli": "codex",
+      "enabled": true,
+      "defaultModel": "gpt-5.2",
+      "capabilities": ["analyze", "search", "visualize", "index"]
+    },
+    "gemini": {
+      "name": "Maestro Gemini",
+      "description": "Gemini workflow for general-purpose AI tasks",
+      "cli": "gemini",
+      "enabled": true,
+      "defaultModel": "gemini-2.5-pro",
+      "capabilities": ["multimodal", "general", "experimental"]
+    },
+    "qwen": {
+      "name": "Maestro Qwen",
+      "description": "Qwen workflow for fast response and experimental tasks",
+      "cli": "qwen",
+      "enabled": true,
+      "defaultModel": "coder-model",
+      "capabilities": ["fast", "experimental", "assistant"]
+    }
+  },
+  "branding": {
+    "name": "Maestro",
+    "tagline": "Orchestrate Your Development Workflow",
+    "website": "https://maestro.dev",
+    "repository": "https://github.com/maestro-suite/maestro"
+  }
+}
+```
+
+---
+
+## 包名规范
+
+### NPM 包
+
+#### @maestro/claude
+
+```json
+{
+  "name": "@maestro/claude",
+  "version": "1.0.0",
+  "description": "Maestro Claude - Claude Code workflow orchestration",
+  "main": "dist/index.js",
+  "types": "dist/index.d.ts",
+  "bin": {
+    "maestro-claude": "./bin/cli.js"
+  },
+  "keywords": [
+    "maestro",
+    "claude",
+    "claude-code",
+    "workflow",
+    "ai",
+    "code-generation"
+  ],
+  "repository": {
+    "type": "git",
+    "url": "https://github.com/maestro-suite/maestro-claude"
+  }
+}
+```
+
+#### @maestro/codex
+
+```json
+{
+  "name": "@maestro/codex",
+  "version": "1.0.0",
+  "description": "Maestro Codex - Codex workflow orchestration",
+  "main": "dist/index.js",
+  "types": "dist/index.d.ts",
+  "bin": {
+    "maestro-codex": "./bin/cli.js"
+  },
+  "keywords": [
+    "maestro",
+    "codex",
+    "workflow",
+    "ai",
+    "code-analysis"
+  ],
+  "repository": {
+    "type": "git",
+    "url": "https://github.com/maestro-suite/maestro-codex"
+  }
+}
+```
+
+### Python 包（如果需要）
+
+#### maestro-claude
+
+```toml
+[project]
+name = "maestro-claude"
+version = "1.0.0"
+description = "Maestro Claude - Claude Code workflow orchestration"
+readme = "README.md"
+requires-python = ">=3.8"
+keywords = ["maestro", "claude", "workflow", "ai"]
+
+[project.urls]
+Homepage = "https://claude.maestro.dev"
+Repository = "https://github.com/maestro-suite/maestro-claude"
+```
+
+---
+
+## 品牌视觉
+
+### Logo 设计
+
+每个工作流使用不同的颜色来区分，但保持统一的设计语言：
+
+| 工作流 | 主色 | 辅助色 | 图标元素 |
+|--------|------|--------|----------|
+| **Maestro Claude** | 橙色 `#FF6B35` | 深橙 `#D94F1C` | Claude 的 C 字母 + 指挥棒 |
+| **Maestro Codex** | 绿色 `#00D084` | 深绿 `#00A86B` | Codex 的代码符号 + 指挥棒 |
+| **Maestro Gemini** | 蓝色 `#4285F4` | 深蓝 `#1967D2` | Gemini 的双子星 + 指挥棒 |
+| **Maestro Qwen** | 紫色 `#9C27B0` | 深紫 `#7B1FA2` | Qwen 的 Q 字母 + 指挥棒 |
+
+### 总品牌色彩
+
+- **主色**: 深蓝/午夜蓝 `#192A56` - 专业、稳定
+- **强调色**: 活力青/薄荷绿 `#48D1CC` - 智能、创新
+- **中性色**: 浅灰 `#F5F5F5`, 深灰 `#333333`
+
+### 设计元素
+
+- **指挥棒**: 所有 Logo 的核心元素，象征编排和指挥
+- **声波/轨迹**: 动态的线条，表示工作流的流动
+- **几何化**: 现代、简洁的几何图形
+
+---
+
+## 方案优点
+
+### 1. 清晰直观
+- 用户一眼就知道使用的是哪个 CLI 工具
+- 不需要学习额外的术语映射
+
+### 2. 易于理解
+- 命名规则简单一致
+- 新用户快速上手
+
+### 3. 灵活扩展
+- 未来添加新 CLI 时，命名规则保持一致
+- 例如：添加 `Maestro GPT`、`Maestro Llama` 等
+
+### 4. 品牌统一
+- 所有工作流都在 Maestro 品牌下
+- 强化 Maestro 作为编排平台的定位
+
+### 5. 技术透明
+- 开发者清楚底层使用的技术栈
+- 便于调试和问题排查
+
+---
+
+## 注意事项
+
+### 1. 商标问题
+
+使用 "Maestro Claude"、"Maestro Codex" 等名称时，需要注意：
+
+- ⚠️ 确保不侵犯原 CLI 的商标权
+- ✅ 在文档中明确说明这些是"基于 XXX 的工作流"，而不是官方产品
+- ✅ 添加免责声明：
+  ```
+  Maestro Claude 是基于 Claude Code 的工作流编排系统。
+  Claude 和 Claude Code 是 Anthropic 的商标。
+  本项目与 Anthropic 无关联。
+  ```
+
+### 2. 命名冲突
+
+在发布前需要检查：
+
+- [ ] npm 包名 `@maestro/claude`、`@maestro/codex` 等是否可用
+- [ ] PyPI 包名 `maestro-claude`、`maestro-codex` 等是否可用
+- [ ] GitHub 组织名 `maestro-suite` 是否可用
+- [ ] 域名 `maestro.dev`、`claude.maestro.dev` 等是否可用
+
+### 3. 用户认知
+
+需要在文档中清楚说明：
+
+- **Maestro** 是编排平台（总品牌）
+- **Maestro Claude/Codex/Gemini/Qwen** 是工作流系统（子品牌）
+- 底层使用的是对应的 CLI 工具（技术实现）
+
+示例说明：
+```
+Maestro 是一个 AI 工作流编排平台。
+Maestro Claude 是基于 Claude Code 的工作流系统，
+它调用 Claude Code CLI 来执行代码生成和重构任务。
+```
+
+---
+
+## 下一步行动
+
+### 阶段 1: 资源可用性检查
+
+- [ ] 检查域名可用性
+  - [ ] `maestro.dev`
+  - [ ] `claude.maestro.dev`
+  - [ ] `codex.maestro.dev`
+  - [ ] `gemini.maestro.dev`
+  - [ ] `qwen.maestro.dev`
+
+- [ ] 检查 npm 包名可用性
+  - [ ] `@maestro/core`
+  - [ ] `@maestro/claude`
+  - [ ] `@maestro/codex`
+  - [ ] `@maestro/gemini`
+  - [ ] `@maestro/qwen`
+
+- [ ] 检查 GitHub 可用性
+  - [ ] 组织名 `maestro-suite`
+  - [ ] 仓库名 `maestro`, `maestro-claude`, `maestro-codex` 等
+
+### 阶段 2: 迁移计划
+
+- [ ] 创建迁移文档（详见 `docs/migration/renaming-plan.md`）
+- [ ] 重命名根目录：`Claude_dms3` → `maestro`
+- [ ] 重组包结构：创建 `packages/` 目录
+- [ ] 更新所有配置文件
+- [ ] 更新代码中的引用
+
+### 阶段 3: 实施和发布
+
+- [ ] 执行迁移
+- [ ] 更新文档和 README
+- [ ] 创建 Logo 和品牌资产
+- [ ] 发布到 npm/PyPI
+- [ ] 配置域名和网站
+
+---
+
+## 参考资料
+
+- [品牌架构设计](./brand-architecture.md)
+- [迁移计划](../migration/renaming-plan.md)
+- [视觉设计指南](./visual-identity.md)
+
+---
+
+## 变更历史
+
+| 版本 | 日期 | 变更内容 | 作者 |
+|------|------|----------|------|
+| 1.0.0 | 2026-03-09 | 初始版本，确定品牌命名系统 | - |