Refactor multi-CLI planning documentation, enhance analyze-with-file skill, and implement timeout for DeepWiki API requests

- Updated SKILL.md for workflow-multi-cli-plan to streamline sections, clarify processes, and improve user decision points.
- Enhanced analyze-with-file skill to include hypothesis impact in key findings and refined recording principles for better documentation.
- Added fetchWithTimeout function to DeepWiki API calls to handle request timeouts, ensuring more robust error handling.
- Introduced new DeepWiki routes in server.ts to manage API requests effectively.
- Updated tsconfig.tsbuildinfo to reflect recent changes in the codebase structure.

ccw/src/core/server.ts

@@ -578,6 +578,11 @@ export async function startServer(options: ServerOptions = {}): Promise<http.Ser
         if (await handleMcpRoutes(routeContext)) return;
       }
 
+      // DeepWiki routes (/api/deepwiki/*)
+      if (pathname.startsWith('/api/deepwiki')) {
+        if (await handleDeepWikiRoutes(routeContext)) return;
+      }
+
       // Hooks routes (/api/hooks, /api/hook)
       if (pathname.startsWith('/api/hook')) {
         if (await handleHooksRoutes(routeContext)) return;