- Clean only files recorded in installation manifest
- Backup only manifest-recorded files instead of entire directories
- Skip cleanup when no manifest exists (first install or manual)
- Preserve user settings (settings.json, settings.local.json)
- Remove unused directory-based cleanup functions
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Add getFileReferenceCounts() to track file references across manifests
- Add cleanupOldFiles() to remove files not in new installation
- Protect shared files referenced by other installations (Global/Path)
- Display cleanup statistics in installation summary
Previously, reinstalling would only overwrite existing files but leave
obsolete files that were removed from source. Now properly cleans up
while protecting files shared between Global and Path installations.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Added a cleanup function to reset the state when navigating away from the graph explorer.
- Updated navigation logic to call the cleanup function before switching views.
- Improved internationalization by adding new translations for graph-related terms.
- Adjusted icon sizes for better UI consistency in the graph explorer.
- Implemented impact analysis button functionality in the graph explorer.
- Refactored CLI tool configuration to use updated model names.
- Enhanced CLI executor to handle prompts correctly for codex commands.
- Introduced code relationship storage for better visualization in the index tree.
- Added support for parsing Markdown and plain text files in the symbol parser.
- Updated tests to reflect changes in language detection logic.
