- Implemented ConfigBackupService for backing up local configuration files.
- Added ConfigSyncService to download configuration files from GitHub with remote-first conflict resolution.
- Created VersionChecker to check application version against the latest GitHub release with caching.
- Introduced security validation utilities for input validation to prevent common vulnerabilities.
- Developed utility functions to start and stop Docusaurus documentation server.
- Introduced `analyze-with-file` command for collaborative analysis.
- Implemented session management for new and continued analysis sessions.
- Developed structured phases for topic understanding, exploration, discussion, and conclusion synthesis.
- Created detailed documentation for the workflow, including examples and implementation details.
- Added Codex prompt for deep analysis and exploration of codebase and concepts.
