feat: add worktree support and refactor do skill to Python

- Add worktree module for git worktree management
- Refactor do skill scripts from shell to Python for better maintainability
- Add install.py for do skill installation
- Update stop-hook to Python implementation
- Enhance executor with additional configuration options
- Update CLAUDE.md with first-principles thinking guidelines

Generated with SWE-Agent.ai

Co-Authored-By: SWE-Agent.ai <noreply@swe-agent.ai>

codeagent-wrapper/internal/executor/executor.go

@@ -21,6 +21,7 @@ import (
 	ilogger "codeagent-wrapper/internal/logger"
 	parser "codeagent-wrapper/internal/parser"
 	utils "codeagent-wrapper/internal/utils"
+	"codeagent-wrapper/internal/worktree"
 )
 
 const postMessageTerminateDelay = 1 * time.Second
@@ -49,6 +50,7 @@ var (
 	selectBackendFn    = backend.Select
 	commandContext     = exec.CommandContext
 	terminateCommandFn = terminateCommand
+	createWorktreeFn   = worktree.CreateWorktree
 )
 
 var forceKillDelay atomic.Int32
@@ -939,6 +941,18 @@ func RunCodexTaskWithContext(parentCtx context.Context, taskSpec TaskSpec, backe
 		cfg.WorkDir = defaultWorkdir
 	}
 
+	// Handle worktree mode: create a new git worktree and update cfg.WorkDir
+	if taskSpec.Worktree {
+		paths, err := createWorktreeFn(cfg.WorkDir)
+		if err != nil {
+			result.ExitCode = 1
+			result.Error = fmt.Sprintf("failed to create worktree: %v", err)
+			return result
+		}
+		cfg.WorkDir = paths.Dir
+		logInfo(fmt.Sprintf("Using worktree: %s (task_id: %s, branch: %s)", paths.Dir, paths.TaskID, paths.Branch))
+	}
+
 	if cfg.Mode == "resume" && strings.TrimSpace(cfg.SessionID) == "" {
 		result.ExitCode = 1
 		result.Error = "resume mode requires non-empty session_id"

codeagent-wrapper/internal/executor/parallel_config.go

@@ -75,6 +75,12 @@ func ParseParallelConfig(data []byte) (*ParallelConfig, error) {
 					continue
 				}
 				task.SkipPermissions = config.ParseBoolFlag(value, false)
+			case "worktree":
+				if value == "" {
+					task.Worktree = true
+					continue
+				}
+				task.Worktree = config.ParseBoolFlag(value, false)
 			case "dependencies":
 				for _, dep := range strings.Split(value, ",") {
 					dep = strings.TrimSpace(dep)

codeagent-wrapper/internal/executor/task_types.go

@@ -21,6 +21,7 @@ type TaskSpec struct {
 	Agent           string          `json:"agent,omitempty"`
 	PromptFile      string          `json:"prompt_file,omitempty"`
 	SkipPermissions bool            `json:"skip_permissions,omitempty"`
+	Worktree        bool            `json:"worktree,omitempty"`
 	AllowedTools    []string        `json:"allowed_tools,omitempty"`
 	DisallowedTools []string        `json:"disallowed_tools,omitempty"`
 	Mode            string          `json:"-"`