Replace external inject-spec.py hook with built-in zero-config skill
detection in codeagent-wrapper. The system auto-detects project type
from fingerprint files (go.mod, package.json, etc.), maps to installed
skills, and injects SKILL.md content directly into sub-agent prompts.
Key changes:
- Add DetectProjectSkills/ResolveSkillContent in executor/prompt.go
- Add Skills field to TaskSpec with parallel config parsing
- Add --skills CLI flag for explicit override
- Update /do SKILL.md Phase 4 with per-task skill examples
- Remove on-stop.py global hook (not needed)
- Replace inject-spec.py with no-op (detection now internal)
- Add 20 unit tests covering detection, resolution, budget, security
Security: path traversal protection via validSkillName regex,
16K char budget with tag overhead accounting, CRLF normalization.
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Previously, each codeagent-wrapper --worktree call created a new worktree,
causing multiple worktrees per /do task (one per phase).
Changes:
- setup-do.py: create worktree at initialization, export DO_WORKTREE_DIR
- executor.go: check DO_WORKTREE_DIR first, reuse if set
- SKILL.md: update documentation for new behavior
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- Add worktree module for git worktree management
- Refactor do skill scripts from shell to Python for better maintainability
- Add install.py for do skill installation
- Update stop-hook to Python implementation
- Enhance executor with additional configuration options
- Update CLAUDE.md with first-principles thinking guidelines
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