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Changes: - Switch from full directory replacement to incremental merge for all directories (.claude, .codex, .gemini, .qwen) - Preserve user's custom files and folders during installation - Add priority backup for critical config files: - .codex/AGENTS.md - .gemini/GEMINI.md, CLAUDE.md - .qwen/QWEN.md - Only overwrite files present in installation package - Auto-cleanup empty backup folders - Update both PowerShell and Bash installers with consistent behavior Benefits: - Non-destructive updates that preserve user customizations - Safer upgrade path with automatic backup - Better user experience during reinstallation 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
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