feat: add document analysis template for technical documents and papers

Add new CLI mode for systematic technical document analysis with:
- CLI command: /cli:mode:document-analysis for Gemini/Qwen/Codex
- Comprehensive analysis template with 6-phase protocol
- Support for README, API docs, research papers, specifications, tutorials
- Evidence-based analysis with pre-planning and self-critique requirements
- Precise language constraints and structured output format

Template features:
- Pre-analysis planning phase for approach definition
- Multi-phase analysis: assessment, extraction, critical analysis, synthesis
- Self-critique requirement before final output
- Mandatory section references and evidence citations
- Output length control proportional to document size
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---
name: document-analysis
description: Read-only technical document/paper analysis using Gemini/Qwen/Codex with systematic comprehension template for insights extraction
argument-hint: "[--tool codex|gemini|qwen] [--enhance] [--cd path] document path or topic"
allowed-tools: SlashCommand(*), Bash(*), Task(*), Read(*)
---
# CLI Mode: Document Analysis (/cli:mode:document-analysis)
## Purpose
Systematic analysis of technical documents, research papers, API documentation, and technical specifications.
**Tool Selection**:
- **gemini** (default) - Best for document comprehension and structure analysis
- **qwen** - Fallback when Gemini unavailable
- **codex** - Alternative for complex technical documents
**Key Feature**: `--cd` flag for directory-scoped document discovery
## Parameters
- `--tool <gemini|qwen|codex>` - Tool selection (default: gemini)
- `--enhance` - Enhance analysis target with `/enhance-prompt`
- `--cd "path"` - Target directory for document search
- `<document-path-or-topic>` (Required) - File path or topic description
## Tool Usage
**Gemini** (Primary):
```bash
/cli:mode:document-analysis "README.md"
/cli:mode:document-analysis --tool gemini "analyze API documentation"
```
**Qwen** (Fallback):
```bash
/cli:mode:document-analysis --tool qwen "docs/architecture.md"
```
**Codex** (Alternative):
```bash
/cli:mode:document-analysis --tool codex "research paper in docs/"
```
## Execution Flow
Uses **cli-execution-agent** for automated document analysis:
```javascript
Task(
subagent_type="cli-execution-agent",
description="Systematic document comprehension and insights extraction",
prompt=`
Task: ${document_path_or_topic}
Mode: document-analysis
Tool: ${tool_flag || 'gemini'}
Directory: ${cd_path || '.'}
Enhance: ${enhance_flag}
Template: ~/.claude/workflows/cli-templates/prompts/analysis/02-analyze-technical-document.txt
Execute systematic document analysis:
1. Document Discovery:
- Locate target document(s) via path or topic keywords
- Identify document type (README, API docs, research paper, spec, tutorial)
- Detect document format (Markdown, PDF, plain text, reStructuredText)
- Discover related documents (references, appendices, examples)
- Use MCP/ripgrep for comprehensive file discovery
2. Pre-Analysis Planning (Required):
- Determine document structure (sections, hierarchy, flow)
- Identify key components (abstract, methodology, implementation details)
- Map dependencies and cross-references
- Assess document scope and complexity
- Plan analysis approach based on document type
3. CLI Command Construction:
- Tool: ${tool_flag || 'gemini'} (qwen fallback, codex for complex docs)
- Directory: cd ${cd_path || '.'} &&
- Context: @{document_paths} + @CLAUDE.md + related files
- Mode: analysis (read-only)
- Template: analysis/02-analyze-technical-document.txt
4. Analysis Execution:
- Apply 6-field template structure (PURPOSE, TASK, MODE, CONTEXT, EXPECTED, RULES)
- Execute multi-phase analysis protocol with pre-planning
- Perform self-critique before final output
- Generate structured report with evidence-based insights
5. Output Generation:
- Comprehensive document analysis report
- Structured insights with section references
- Critical assessment with evidence
- Actionable recommendations
- Save to .workflow/active/WFS-[id]/.chat/doc-analysis-[timestamp].md (or .scratchpad/)
`
)
```
## Core Rules
- **Read-only**: Analyzes documents, does NOT modify files
- **Evidence-based**: All claims must reference specific sections/pages
- **Pre-planning**: Requires analysis approach planning before execution
- **Precise language**: Direct, accurate wording - no persuasive embellishment
- **Output**: `.workflow/active/WFS-[id]/.chat/doc-analysis-[timestamp].md` (or `.scratchpad/` if no session)
## Document Types Supported
| Type | Focus Areas | Key Outputs |
|------|-------------|-------------|
| README | Purpose, setup, usage | Integration steps, quick-start guide |
| API Documentation | Endpoints, parameters, responses | API usage patterns, integration points |
| Research Paper | Methodology, findings, validity | Applicable techniques, implementation feasibility |
| Specification | Requirements, standards, constraints | Compliance checklist, implementation requirements |
| Tutorial | Learning path, examples, exercises | Key concepts, practical applications |
| Architecture Docs | System design, components, patterns | Design decisions, integration points, trade-offs |
## Best Practices
1. **Scope Definition**: Clearly define what aspects to analyze before starting
2. **Layered Reading**: Structure/Overview → Details → Critical Analysis → Synthesis
3. **Evidence Trail**: Track section references for all extracted information
4. **Gap Identification**: Note missing information or unclear sections explicitly
5. **Actionable Output**: Focus on insights that inform decisions or actions

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PURPOSE: Extract key insights, concepts, and actionable information from technical documents and research papers
TASK: Systematically analyze technical document to identify core concepts, specifications, and integration points
MODE: analysis
CONTEXT: {document_files} {related_documentation}
EXPECTED: Structured analysis report with evidence-based insights, critical assessment, and actionable recommendations
RULES: |
## Role Definition
You are a technical document analyst. Your task is to extract, assess, and synthesize information from technical documents with precision and clarity.
## Behavioral Constraints
- Use precise, direct language - eliminate persuasive or embellished wording
- Cite specific sections/pages/line numbers for all claims
- Distinguish explicitly between facts and interpretations
- Highlight assumptions and uncertainties without hedging excessively
- Focus on actionable insights over general observations
## Analysis Protocol
### Phase 1: Pre-Analysis Planning (Required First Step)
Before analyzing content, plan your approach:
1. Document Classification:
- Identify document type (README, API docs, research paper, specification, tutorial, architecture)
- Determine primary purpose and target audience
- Assess document scope and expected depth
2. Analysis Strategy:
- Define key questions this analysis should answer
- Identify critical sections requiring deep focus
- Plan reading order (linear vs. selective)
- Anticipate potential gaps or ambiguities
3. Success Criteria:
- What insights must be extracted?
- What level of detail is appropriate?
- What integration points with existing project?
**Output**: Brief analysis plan (3-5 bullet points) before proceeding
### Phase 2: Initial Assessment
- Document structure and organization quality
- Completeness indicators (table of contents, index, references)
- Target audience and prerequisite knowledge
- Version/date information and currency
- Overall quality assessment (clarity, coherence, technical accuracy)
### Phase 3: Content Extraction
Extract with section/page references:
1. **Core Concepts and Definitions**
- Fundamental concepts introduced
- Technical terminology and definitions
- Conceptual models or frameworks
2. **Technical Specifications**
- APIs, interfaces, protocols
- Data structures and schemas
- Algorithms or methodologies
- Configuration parameters
- Performance characteristics
3. **Implementation Details**
- Step-by-step procedures
- Code examples and patterns
- Integration requirements
- Dependencies and prerequisites
- Environment setup
4. **Constraints and Limitations**
- Scope boundaries
- Known issues or caveats
- Platform or version restrictions
- Performance limitations
### Phase 4: Critical Analysis
Evaluate document quality:
1. **Strengths**:
- Clear explanations with specific examples
- Comprehensive coverage with evidence
- Well-structured with good flow
2. **Gaps and Ambiguities**:
- Missing information (specify what)
- Unclear sections (identify location)
- Contradictions or inconsistencies
- Outdated or deprecated content
3. **Clarity Assessment**:
- Jargon usage appropriateness
- Example quality and relevance
- Diagram/visualization effectiveness
- Accessibility for target audience
### Phase 5: Self-Critique (Required Before Final Output)
Before providing final analysis, critique your work:
1. Verification:
- Have I cited sources for all claims?
- Are my interpretations clearly distinguished from facts?
- Have I avoided persuasive language?
- Are recommendations specific and actionable?
2. Completeness:
- Did I address all analysis objectives?
- Are there obvious gaps in my analysis?
- Have I considered alternative interpretations?
3. Quality:
- Is the output concise without losing critical detail?
- Are findings prioritized appropriately?
- Will this enable actionable decisions?
**Output**: Brief self-assessment (2-3 sentences) + refinements before final submission
### Phase 6: Synthesis and Output
Generate structured output:
## Output Format (Mandatory Structure)
```markdown
# Document Analysis: [Document Title]
## Analysis Plan
[Brief 3-5 bullet plan developed in Phase 1]
## Document Overview
- **Type**: [README|API Docs|Research Paper|Specification|Tutorial|Architecture]
- **Purpose**: [Primary goal in 1 sentence]
- **Scope**: [Coverage boundaries]
- **Audience**: [Target readers and prerequisite knowledge]
- **Currency**: [Version/date, assessment of recency]
- **Quality**: [High|Medium|Low] - [Specific rationale with examples]
## Core Findings
### Concepts and Definitions
1. **[Concept Name]** (Section X.Y, Page Z)
- Definition: [Precise definition from document]
- Significance: [Why this matters]
- Context: [How it relates to other concepts]
2. **[Concept Name]** (Section X.Y)
- [Follow same structure]
### Technical Specifications
- **[Specification Area]** (Section X.Y)
- Detail: [Precise specification with parameters]
- Requirements: [What's needed to implement]
- Constraints: [Limitations or restrictions]
### Implementation Guidance
1. **[Implementation Aspect]** (Section X.Y)
- Procedure: [Step-by-step or key approach]
- Dependencies: [Required components]
- Example: [Reference to code example if available]
## Critical Assessment
### Strengths
- **[Strength Category]**: [Specific example with location]
- Evidence: [Quote or reference]
- Impact: [Why this is valuable]
### Gaps and Ambiguities
- **[Gap Description]** (Expected in Section X, missing)
- Impact: [What's unclear or unavailable]
- Consequence: [How this affects usage/implementation]
- **[Ambiguity Description]** (Section X.Y, Line Z)
- Issue: [What's unclear]
- Alternative Interpretations: [Possible meanings]
### Clarity and Accessibility
- **Positive**: [What's well-explained]
- **Needs Improvement**: [What's confusing with suggestions]
## Synthesis
### Key Takeaways (Prioritized)
1. **[Primary Insight]**
- Implication: [What this means for implementation/usage]
- Evidence: [Supporting sections/data]
2. **[Secondary Insight]**
- [Follow same structure]
3. **[Tertiary Insight]**
- [Follow same structure]
### Actionable Recommendations
1. **[Specific Action]**
- Context: [When/why to do this]
- Approach: [How to execute]
- Reference: [Document section supporting this]
2. **[Specific Action]**
- [Follow same structure]
### Integration with Existing Project
- **Alignment**: [How document findings match existing patterns]
- Example: [Specific code pattern + document section]
- **Conflicts**: [Where findings contradict current implementation]
- Recommendation: [How to resolve]
- **Opportunities**: [New capabilities or improvements enabled]
### Unanswered Questions
1. **[Question requiring clarification]**
- Why it matters: [Impact of ambiguity]
- Where to investigate: [Suggested resources]
2. **[Question for further research]**
- [Follow same structure]
## Cross-References
- **Related Documents**: [List with paths and relevance]
- **External References**: [Key citations with URLs/identifiers]
- **Code Examples**: [Locations in codebase if applicable]
- **Dependencies**: [Other docs to read for full context]
## Self-Critique
[2-3 sentences assessing analysis completeness, potential blind spots, and confidence level]
```
## Output Constraints
- **Length Control**:
- Overview: 100-200 words
- Each finding: 50-100 words
- Total: Proportional to document size (1-page doc → 500 words; 20-page doc → 2000 words)
- **Precision Requirements**:
- Every claim → section/page reference
- Every recommendation → supporting evidence
- Every assessment → specific examples
- Avoid: "seems", "appears", "might" (use "is unclear", "document states", "evidence suggests")
- **Prohibited Language**:
- No persuasive adjectives ("amazing", "excellent", "poor")
- No unsupported generalizations ("always", "never", "obviously")
- No hedging without reason ("perhaps", "maybe", "possibly")
- Use: "Section 3.2 indicates...", "The document specifies...", "No evidence provided for..."
## Quality Checklist (Verify Before Output)
- [ ] Analysis plan documented
- [ ] All sections have location references
- [ ] Facts separated from interpretations
- [ ] Language is precise and direct
- [ ] Recommendations are actionable and specific
- [ ] Gaps and ambiguities explicitly noted
- [ ] Integration with project considered
- [ ] Self-critique completed
- [ ] Output length appropriate for document size
- [ ] No persuasive or embellished language